Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00850 and AO353_00855 are separated by 84 nucleotides AO353_00855 and AO353_00860 are separated by 100 nucleotides AO353_00860 and AO353_00865 are separated by 101 nucleotides
AO353_00850: AO353_00850 - ribonuclease activity regulator protein RraA, at 193,067 to 193,558
_00850
AO353_00855: AO353_00855 - Rieske iron-sulfur protein, at 193,643 to 193,942
_00855
AO353_00860: AO353_00860 - EstX protein, at 194,043 to 195,032
_00860
AO353_00865: AO353_00865 - phosphoenolpyruvate synthase, at 195,134 to 197,509
_00865
Position (kb) 194
195
196 Strain fitness (log2 ratio) -2
-1
0
1
2 at 193.069 kb on - strand at 193.122 kb on + strand, within AO353_00850 at 193.122 kb on + strand, within AO353_00850 at 193.123 kb on - strand, within AO353_00850 at 193.123 kb on - strand, within AO353_00850 at 193.123 kb on - strand, within AO353_00850 at 193.128 kb on + strand, within AO353_00850 at 193.128 kb on + strand, within AO353_00850 at 193.129 kb on - strand, within AO353_00850 at 193.129 kb on - strand, within AO353_00850 at 193.129 kb on - strand, within AO353_00850 at 193.129 kb on - strand, within AO353_00850 at 193.278 kb on + strand, within AO353_00850 at 193.278 kb on + strand, within AO353_00850 at 193.278 kb on + strand, within AO353_00850 at 193.279 kb on - strand, within AO353_00850 at 193.279 kb on - strand, within AO353_00850 at 193.282 kb on + strand, within AO353_00850 at 193.543 kb on + strand at 193.543 kb on + strand at 193.544 kb on - strand at 193.544 kb on - strand at 193.548 kb on + strand at 193.548 kb on + strand at 193.548 kb on + strand at 193.548 kb on + strand at 193.548 kb on + strand at 193.549 kb on - strand at 193.549 kb on - strand at 193.549 kb on - strand at 193.549 kb on - strand at 193.549 kb on - strand at 193.572 kb on + strand at 193.573 kb on - strand at 193.631 kb on + strand at 193.631 kb on + strand at 193.632 kb on - strand at 193.674 kb on + strand, within AO353_00855 at 193.674 kb on + strand, within AO353_00855 at 193.674 kb on + strand, within AO353_00855 at 193.674 kb on + strand, within AO353_00855 at 193.675 kb on - strand, within AO353_00855 at 193.675 kb on - strand, within AO353_00855 at 193.675 kb on - strand, within AO353_00855 at 193.675 kb on - strand, within AO353_00855 at 193.690 kb on + strand, within AO353_00855 at 193.690 kb on + strand, within AO353_00855 at 193.690 kb on + strand, within AO353_00855 at 193.690 kb on + strand, within AO353_00855 at 193.691 kb on - strand, within AO353_00855 at 193.715 kb on + strand, within AO353_00855 at 193.771 kb on + strand, within AO353_00855 at 193.772 kb on - strand, within AO353_00855 at 193.772 kb on - strand, within AO353_00855 at 193.772 kb on - strand, within AO353_00855 at 193.826 kb on + strand, within AO353_00855 at 193.826 kb on + strand, within AO353_00855 at 193.827 kb on - strand, within AO353_00855 at 193.827 kb on - strand, within AO353_00855 at 193.827 kb on - strand, within AO353_00855 at 193.942 kb on + strand at 193.942 kb on + strand at 193.942 kb on + strand at 193.942 kb on + strand at 193.942 kb on + strand at 193.942 kb on + strand at 193.942 kb on + strand at 193.942 kb on + strand at 193.943 kb on - strand at 193.943 kb on - strand at 193.943 kb on - strand at 193.943 kb on - strand at 193.943 kb on - strand at 193.943 kb on - strand at 193.943 kb on - strand at 193.943 kb on - strand at 193.943 kb on - strand at 193.943 kb on - strand at 193.943 kb on - strand at 193.943 kb on - strand at 193.990 kb on + strand at 193.990 kb on + strand at 194.040 kb on + strand at 194.041 kb on - strand at 194.371 kb on + strand, within AO353_00860 at 194.372 kb on - strand, within AO353_00860 at 194.509 kb on + strand, within AO353_00860 at 194.509 kb on + strand, within AO353_00860 at 194.510 kb on - strand, within AO353_00860 at 194.510 kb on - strand, within AO353_00860 at 194.510 kb on - strand, within AO353_00860 at 194.510 kb on - strand, within AO353_00860 at 194.569 kb on + strand, within AO353_00860 at 194.570 kb on - strand, within AO353_00860 at 194.570 kb on - strand, within AO353_00860 at 194.570 kb on - strand, within AO353_00860 at 194.689 kb on + strand, within AO353_00860 at 194.789 kb on - strand, within AO353_00860 at 194.919 kb on + strand, within AO353_00860 at 194.919 kb on + strand, within AO353_00860 at 195.032 kb on + strand at 195.077 kb on + strand at 195.271 kb on + strand at 195.271 kb on + strand at 195.272 kb on - strand at 195.272 kb on - strand at 195.272 kb on - strand at 195.279 kb on + strand at 195.279 kb on + strand at 195.279 kb on + strand at 195.279 kb on + strand at 195.279 kb on + strand at 195.280 kb on - strand at 195.280 kb on - strand at 195.280 kb on - strand at 195.295 kb on + strand at 195.295 kb on + strand at 195.296 kb on - strand at 195.681 kb on + strand, within AO353_00865 at 195.682 kb on - strand, within AO353_00865 at 195.682 kb on - strand, within AO353_00865 at 195.733 kb on - strand, within AO353_00865 at 195.760 kb on - strand, within AO353_00865 at 195.855 kb on + strand, within AO353_00865 at 195.856 kb on - strand, within AO353_00865 at 195.856 kb on - strand, within AO353_00865 at 195.876 kb on + strand, within AO353_00865 at 195.930 kb on + strand, within AO353_00865 at 195.931 kb on - strand, within AO353_00865 at 195.931 kb on - strand, within AO353_00865 at 195.931 kb on - strand, within AO353_00865 at 195.931 kb on - strand, within AO353_00865
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 193,069 - +2.1 193,122 + AO353_00850 0.11 +0.4 193,122 + AO353_00850 0.11 +0.2 193,123 - AO353_00850 0.11 -0.2 193,123 - AO353_00850 0.11 -0.8 193,123 - AO353_00850 0.11 +0.9 193,128 + AO353_00850 0.12 -0.0 193,128 + AO353_00850 0.12 +1.9 193,129 - AO353_00850 0.13 -0.6 193,129 - AO353_00850 0.13 +0.1 193,129 - AO353_00850 0.13 +0.3 193,129 - AO353_00850 0.13 -1.2 193,278 + AO353_00850 0.43 -0.5 193,278 + AO353_00850 0.43 -0.6 193,278 + AO353_00850 0.43 -1.4 193,279 - AO353_00850 0.43 -0.2 193,279 - AO353_00850 0.43 +0.4 193,282 + AO353_00850 0.44 -0.1 193,543 + -0.2 193,543 + -1.1 193,544 - -0.2 193,544 - -1.7 193,548 + -0.0 193,548 + -0.7 193,548 + -0.6 193,548 + +1.0 193,548 + -0.6 193,549 - +0.7 193,549 - -0.1 193,549 - -0.3 193,549 - -0.7 193,549 - -1.4 193,572 + +0.7 193,573 - +0.5 193,631 + -1.4 193,631 + -0.9 193,632 - -0.2 193,674 + AO353_00855 0.10 -1.0 193,674 + AO353_00855 0.10 +0.7 193,674 + AO353_00855 0.10 -0.2 193,674 + AO353_00855 0.10 -0.6 193,675 - AO353_00855 0.11 -1.2 193,675 - AO353_00855 0.11 -0.2 193,675 - AO353_00855 0.11 -0.6 193,675 - AO353_00855 0.11 -0.7 193,690 + AO353_00855 0.16 -0.2 193,690 + AO353_00855 0.16 -0.3 193,690 + AO353_00855 0.16 +0.9 193,690 + AO353_00855 0.16 -1.4 193,691 - AO353_00855 0.16 +0.2 193,715 + AO353_00855 0.24 -0.4 193,771 + AO353_00855 0.43 -0.2 193,772 - AO353_00855 0.43 -0.5 193,772 - AO353_00855 0.43 +0.7 193,772 - AO353_00855 0.43 -1.2 193,826 + AO353_00855 0.61 -1.1 193,826 + AO353_00855 0.61 -1.2 193,827 - AO353_00855 0.61 -0.3 193,827 - AO353_00855 0.61 +1.0 193,827 - AO353_00855 0.61 -0.1 193,942 + -0.2 193,942 + -1.5 193,942 + +0.2 193,942 + -0.3 193,942 + -0.2 193,942 + -0.1 193,942 + -1.1 193,942 + -1.0 193,943 - -0.4 193,943 - +0.3 193,943 - -2.2 193,943 - -0.4 193,943 - +1.4 193,943 - -0.8 193,943 - -0.8 193,943 - -0.5 193,943 - -0.9 193,943 - -1.0 193,943 - -1.9 193,943 - +1.2 193,990 + +0.1 193,990 + -0.6 194,040 + -0.2 194,041 - -2.0 194,371 + AO353_00860 0.33 -0.0 194,372 - AO353_00860 0.33 -2.1 194,509 + AO353_00860 0.47 -0.4 194,509 + AO353_00860 0.47 -0.6 194,510 - AO353_00860 0.47 -0.5 194,510 - AO353_00860 0.47 +0.8 194,510 - AO353_00860 0.47 +0.4 194,510 - AO353_00860 0.47 +0.4 194,569 + AO353_00860 0.53 -0.3 194,570 - AO353_00860 0.53 -0.9 194,570 - AO353_00860 0.53 -0.2 194,570 - AO353_00860 0.53 -2.5 194,689 + AO353_00860 0.65 -2.2 194,789 - AO353_00860 0.75 -0.1 194,919 + AO353_00860 0.88 -1.2 194,919 + AO353_00860 0.88 -0.3 195,032 + -0.9 195,077 + -0.8 195,271 + +1.1 195,271 + -1.6 195,272 - +0.1 195,272 - -1.8 195,272 - +0.1 195,279 + +0.8 195,279 + -1.6 195,279 + +0.4 195,279 + -1.1 195,279 + -0.6 195,280 - +1.1 195,280 - +0.4 195,280 - -1.5 195,295 + -1.2 195,295 + -0.7 195,296 - +0.2 195,681 + AO353_00865 0.23 -1.6 195,682 - AO353_00865 0.23 -2.1 195,682 - AO353_00865 0.23 +0.4 195,733 - AO353_00865 0.25 -0.0 195,760 - AO353_00865 0.26 -1.8 195,855 + AO353_00865 0.30 -1.2 195,856 - AO353_00865 0.30 -1.6 195,856 - AO353_00865 0.30 -2.1 195,876 + AO353_00865 0.31 +0.1 195,930 + AO353_00865 0.34 +0.9 195,931 - AO353_00865 0.34 -0.6 195,931 - AO353_00865 0.34 +0.1 195,931 - AO353_00865 0.34 +0.2 195,931 - AO353_00865 0.34 +0.3
Or see this region's nucleotide sequence