Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00150

Experiment: Tetracycline 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00145 and AO353_00150 overlap by 4 nucleotidesAO353_00150 and AO353_00155 overlap by 4 nucleotides AO353_00145: AO353_00145 - hypothetical protein, at 30,076 to 31,251 _00145 AO353_00150: AO353_00150 - hypothetical protein, at 31,248 to 31,565 _00150 AO353_00155: AO353_00155 - phage tail protein, at 31,562 to 33,547 _00155 Position (kb) 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 30.328 kb on + strand, within AO353_00145at 30.328 kb on + strand, within AO353_00145at 30.328 kb on + strand, within AO353_00145at 30.329 kb on - strand, within AO353_00145at 30.329 kb on - strand, within AO353_00145at 30.329 kb on - strand, within AO353_00145at 30.329 kb on - strand, within AO353_00145at 30.329 kb on - strand, within AO353_00145at 30.455 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.491 kb on + strand, within AO353_00145at 30.492 kb on - strand, within AO353_00145at 30.492 kb on - strand, within AO353_00145at 30.492 kb on - strand, within AO353_00145at 30.492 kb on - strand, within AO353_00145at 30.536 kb on + strand, within AO353_00145at 30.537 kb on - strand, within AO353_00145at 30.537 kb on - strand, within AO353_00145at 30.744 kb on - strand, within AO353_00145at 30.746 kb on + strand, within AO353_00145at 30.747 kb on - strand, within AO353_00145at 30.764 kb on + strand, within AO353_00145at 30.764 kb on + strand, within AO353_00145at 31.124 kb on + strand, within AO353_00145at 31.124 kb on + strand, within AO353_00145at 31.125 kb on - strand, within AO353_00145at 31.125 kb on - strand, within AO353_00145at 31.233 kb on + strandat 31.234 kb on - strandat 31.257 kb on + strandat 31.257 kb on + strandat 31.257 kb on + strandat 31.258 kb on - strandat 31.258 kb on - strandat 31.286 kb on + strand, within AO353_00150at 31.365 kb on + strand, within AO353_00150at 31.366 kb on - strand, within AO353_00150at 31.366 kb on - strand, within AO353_00150at 31.366 kb on - strand, within AO353_00150at 31.368 kb on + strand, within AO353_00150at 31.368 kb on + strand, within AO353_00150at 31.368 kb on + strand, within AO353_00150at 31.368 kb on + strand, within AO353_00150at 31.369 kb on - strand, within AO353_00150at 31.369 kb on - strand, within AO353_00150at 31.369 kb on - strand, within AO353_00150at 31.369 kb on - strand, within AO353_00150at 31.386 kb on - strand, within AO353_00150at 31.545 kb on + strandat 31.545 kb on + strandat 31.545 kb on + strandat 31.545 kb on + strandat 31.545 kb on + strandat 31.546 kb on - strandat 31.546 kb on - strandat 31.555 kb on + strandat 31.555 kb on + strandat 31.555 kb on + strandat 31.870 kb on + strand, within AO353_00155at 31.870 kb on + strand, within AO353_00155at 31.871 kb on - strand, within AO353_00155at 31.871 kb on - strand, within AO353_00155at 31.871 kb on - strandat 32.059 kb on - strand, within AO353_00155at 32.061 kb on + strand, within AO353_00155at 32.061 kb on + strand, within AO353_00155at 32.062 kb on - strandat 32.502 kb on - strand, within AO353_00155

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml
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30,328 + AO353_00145 0.21 -1.6
30,328 + AO353_00145 0.21 -0.4
30,328 + AO353_00145 0.21 -0.0
30,329 - AO353_00145 0.22 -1.9
30,329 - AO353_00145 0.22 -2.5
30,329 - AO353_00145 0.22 -0.8
30,329 - AO353_00145 0.22 +0.9
30,329 - AO353_00145 0.22 -0.7
30,455 + AO353_00145 0.32 +0.6
30,491 + AO353_00145 0.35 +0.4
30,491 + AO353_00145 0.35 +0.9
30,491 + AO353_00145 0.35 +1.4
30,491 + AO353_00145 0.35 +0.2
30,491 + AO353_00145 0.35 +0.6
30,491 + AO353_00145 0.35 -0.6
30,491 + AO353_00145 0.35 -0.6
30,491 + AO353_00145 0.35 +0.4
30,491 + AO353_00145 0.35 -0.6
30,491 + AO353_00145 0.35 -1.1
30,491 + AO353_00145 0.35 +0.4
30,492 - AO353_00145 0.35 -1.8
30,492 - AO353_00145 0.35 -0.6
30,492 - AO353_00145 0.35 +0.4
30,492 - AO353_00145 0.35 +1.5
30,536 + AO353_00145 0.39 +0.4
30,537 - AO353_00145 0.39 -0.4
30,537 - AO353_00145 0.39 -0.5
30,744 - AO353_00145 0.57 -0.8
30,746 + AO353_00145 0.57 -0.1
30,747 - AO353_00145 0.57 +0.1
30,764 + AO353_00145 0.59 -0.5
30,764 + AO353_00145 0.59 +0.1
31,124 + AO353_00145 0.89 -0.9
31,124 + AO353_00145 0.89 +1.8
31,125 - AO353_00145 0.89 -0.1
31,125 - AO353_00145 0.89 +0.7
31,233 + -0.0
31,234 - +0.3
31,257 + +0.1
31,257 + +0.0
31,257 + -1.4
31,258 - -0.8
31,258 - -0.8
31,286 + AO353_00150 0.12 -1.6
31,365 + AO353_00150 0.37 -1.3
31,366 - AO353_00150 0.37 +0.2
31,366 - AO353_00150 0.37 +1.4
31,366 - AO353_00150 0.37 -1.2
31,368 + AO353_00150 0.38 +1.1
31,368 + AO353_00150 0.38 -1.4
31,368 + AO353_00150 0.38 +1.1
31,368 + AO353_00150 0.38 -1.0
31,369 - AO353_00150 0.38 -1.4
31,369 - AO353_00150 0.38 -1.0
31,369 - AO353_00150 0.38 +0.6
31,369 - AO353_00150 0.38 -0.6
31,386 - AO353_00150 0.43 -1.7
31,545 + +0.2
31,545 + -2.1
31,545 + +0.2
31,545 + -0.7
31,545 + +0.8
31,546 - -2.2
31,546 - -0.7
31,555 + +0.4
31,555 + -0.6
31,555 + -1.2
31,870 + AO353_00155 0.16 -0.1
31,870 + AO353_00155 0.16 -0.8
31,871 - AO353_00155 0.16 +0.1
31,871 - AO353_00155 0.16 +0.3
31,871 - +0.8
32,059 - AO353_00155 0.25 -0.7
32,061 + AO353_00155 0.25 -1.2
32,061 + AO353_00155 0.25 -0.2
32,062 - +0.1
32,502 - AO353_00155 0.47 -0.2

Or see this region's nucleotide sequence