Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00145 and AO353_00150 overlap by 4 nucleotides AO353_00150 and AO353_00155 overlap by 4 nucleotides
AO353_00145: AO353_00145 - hypothetical protein, at 30,076 to 31,251
_00145
AO353_00150: AO353_00150 - hypothetical protein, at 31,248 to 31,565
_00150
AO353_00155: AO353_00155 - phage tail protein, at 31,562 to 33,547
_00155
Position (kb)
31
32 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 30.328 kb on + strand, within AO353_00145 at 30.328 kb on + strand, within AO353_00145 at 30.328 kb on + strand, within AO353_00145 at 30.329 kb on - strand, within AO353_00145 at 30.329 kb on - strand, within AO353_00145 at 30.329 kb on - strand, within AO353_00145 at 30.329 kb on - strand, within AO353_00145 at 30.329 kb on - strand, within AO353_00145 at 30.455 kb on + strand, within AO353_00145 at 30.491 kb on + strand, within AO353_00145 at 30.491 kb on + strand, within AO353_00145 at 30.491 kb on + strand, within AO353_00145 at 30.491 kb on + strand, within AO353_00145 at 30.491 kb on + strand, within AO353_00145 at 30.491 kb on + strand, within AO353_00145 at 30.491 kb on + strand, within AO353_00145 at 30.491 kb on + strand, within AO353_00145 at 30.491 kb on + strand, within AO353_00145 at 30.491 kb on + strand, within AO353_00145 at 30.491 kb on + strand, within AO353_00145 at 30.492 kb on - strand, within AO353_00145 at 30.492 kb on - strand, within AO353_00145 at 30.492 kb on - strand, within AO353_00145 at 30.492 kb on - strand, within AO353_00145 at 30.536 kb on + strand, within AO353_00145 at 30.537 kb on - strand, within AO353_00145 at 30.537 kb on - strand, within AO353_00145 at 30.744 kb on - strand, within AO353_00145 at 30.746 kb on + strand, within AO353_00145 at 30.747 kb on - strand, within AO353_00145 at 30.764 kb on + strand, within AO353_00145 at 30.764 kb on + strand, within AO353_00145 at 31.124 kb on + strand, within AO353_00145 at 31.124 kb on + strand, within AO353_00145 at 31.125 kb on - strand, within AO353_00145 at 31.125 kb on - strand, within AO353_00145 at 31.233 kb on + strand at 31.234 kb on - strand at 31.257 kb on + strand at 31.257 kb on + strand at 31.257 kb on + strand at 31.258 kb on - strand at 31.258 kb on - strand at 31.286 kb on + strand, within AO353_00150 at 31.365 kb on + strand, within AO353_00150 at 31.366 kb on - strand, within AO353_00150 at 31.366 kb on - strand, within AO353_00150 at 31.366 kb on - strand, within AO353_00150 at 31.368 kb on + strand, within AO353_00150 at 31.368 kb on + strand, within AO353_00150 at 31.368 kb on + strand, within AO353_00150 at 31.368 kb on + strand, within AO353_00150 at 31.369 kb on - strand, within AO353_00150 at 31.369 kb on - strand, within AO353_00150 at 31.369 kb on - strand, within AO353_00150 at 31.369 kb on - strand, within AO353_00150 at 31.386 kb on - strand, within AO353_00150 at 31.545 kb on + strand at 31.545 kb on + strand at 31.545 kb on + strand at 31.545 kb on + strand at 31.545 kb on + strand at 31.546 kb on - strand at 31.546 kb on - strand at 31.555 kb on + strand at 31.555 kb on + strand at 31.555 kb on + strand at 31.870 kb on + strand, within AO353_00155 at 31.870 kb on + strand, within AO353_00155 at 31.871 kb on - strand, within AO353_00155 at 31.871 kb on - strand, within AO353_00155 at 31.871 kb on - strand at 32.059 kb on - strand, within AO353_00155 at 32.061 kb on + strand, within AO353_00155 at 32.061 kb on + strand, within AO353_00155 at 32.062 kb on - strand at 32.502 kb on - strand, within AO353_00155
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 30,328 + AO353_00145 0.21 -1.6 30,328 + AO353_00145 0.21 -0.4 30,328 + AO353_00145 0.21 -0.0 30,329 - AO353_00145 0.22 -1.9 30,329 - AO353_00145 0.22 -2.5 30,329 - AO353_00145 0.22 -0.8 30,329 - AO353_00145 0.22 +0.9 30,329 - AO353_00145 0.22 -0.7 30,455 + AO353_00145 0.32 +0.6 30,491 + AO353_00145 0.35 +0.4 30,491 + AO353_00145 0.35 +0.9 30,491 + AO353_00145 0.35 +1.4 30,491 + AO353_00145 0.35 +0.2 30,491 + AO353_00145 0.35 +0.6 30,491 + AO353_00145 0.35 -0.6 30,491 + AO353_00145 0.35 -0.6 30,491 + AO353_00145 0.35 +0.4 30,491 + AO353_00145 0.35 -0.6 30,491 + AO353_00145 0.35 -1.1 30,491 + AO353_00145 0.35 +0.4 30,492 - AO353_00145 0.35 -1.8 30,492 - AO353_00145 0.35 -0.6 30,492 - AO353_00145 0.35 +0.4 30,492 - AO353_00145 0.35 +1.5 30,536 + AO353_00145 0.39 +0.4 30,537 - AO353_00145 0.39 -0.4 30,537 - AO353_00145 0.39 -0.5 30,744 - AO353_00145 0.57 -0.8 30,746 + AO353_00145 0.57 -0.1 30,747 - AO353_00145 0.57 +0.1 30,764 + AO353_00145 0.59 -0.5 30,764 + AO353_00145 0.59 +0.1 31,124 + AO353_00145 0.89 -0.9 31,124 + AO353_00145 0.89 +1.8 31,125 - AO353_00145 0.89 -0.1 31,125 - AO353_00145 0.89 +0.7 31,233 + -0.0 31,234 - +0.3 31,257 + +0.1 31,257 + +0.0 31,257 + -1.4 31,258 - -0.8 31,258 - -0.8 31,286 + AO353_00150 0.12 -1.6 31,365 + AO353_00150 0.37 -1.3 31,366 - AO353_00150 0.37 +0.2 31,366 - AO353_00150 0.37 +1.4 31,366 - AO353_00150 0.37 -1.2 31,368 + AO353_00150 0.38 +1.1 31,368 + AO353_00150 0.38 -1.4 31,368 + AO353_00150 0.38 +1.1 31,368 + AO353_00150 0.38 -1.0 31,369 - AO353_00150 0.38 -1.4 31,369 - AO353_00150 0.38 -1.0 31,369 - AO353_00150 0.38 +0.6 31,369 - AO353_00150 0.38 -0.6 31,386 - AO353_00150 0.43 -1.7 31,545 + +0.2 31,545 + -2.1 31,545 + +0.2 31,545 + -0.7 31,545 + +0.8 31,546 - -2.2 31,546 - -0.7 31,555 + +0.4 31,555 + -0.6 31,555 + -1.2 31,870 + AO353_00155 0.16 -0.1 31,870 + AO353_00155 0.16 -0.8 31,871 - AO353_00155 0.16 +0.1 31,871 - AO353_00155 0.16 +0.3 31,871 - +0.8 32,059 - AO353_00155 0.25 -0.7 32,061 + AO353_00155 0.25 -1.2 32,061 + AO353_00155 0.25 -0.2 32,062 - +0.1 32,502 - AO353_00155 0.47 -0.2
Or see this region's nucleotide sequence