Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3187 and DvMF_3188 are separated by 4 nucleotides DvMF_3188 and DvMF_3189 are separated by 28 nucleotides DvMF_3189 and DvMF_3190 overlap by 4 nucleotides DvMF_3190 and DvMF_3191 overlap by 32 nucleotides
DvMF_3187: DvMF_3187 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 4,018,511 to 4,019,044
_3187
DvMF_3188: DvMF_3188 - hydrogenase nickel insertion protein HypA (RefSeq), at 4,019,049 to 4,019,435
_3188
DvMF_3189: DvMF_3189 - NADH dehydrogenase (quinone) (RefSeq), at 4,019,464 to 4,020,597
_3189
DvMF_3190: DvMF_3190 - NADH dehydrogenase (ubiquinone) 30 kDa subunit (RefSeq), at 4,020,594 to 4,021,241
_3190
DvMF_3191: DvMF_3191 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 4,021,210 to 4,021,899
_3191
Position (kb) 4019
4020
4021 Strain fitness (log2 ratio) -1
0
1 at 4019.105 kb on + strand, within DvMF_3188 at 4019.627 kb on + strand, within DvMF_3189 at 4019.858 kb on + strand, within DvMF_3189 at 4020.230 kb on - strand, within DvMF_3189 at 4020.585 kb on + strand at 4020.968 kb on + strand, within DvMF_3190 at 4020.970 kb on - strand, within DvMF_3190 at 4021.207 kb on + strand at 4021.568 kb on - strand, within DvMF_3191
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 4,019,105 + DvMF_3188 0.14 +0.4 4,019,627 + DvMF_3189 0.14 -1.0 4,019,858 + DvMF_3189 0.35 -0.7 4,020,230 - DvMF_3189 0.68 -0.1 4,020,585 + -1.6 4,020,968 + DvMF_3190 0.58 +0.8 4,020,970 - DvMF_3190 0.58 +1.4 4,021,207 + -1.4 4,021,568 - DvMF_3191 0.52 -0.2
Or see this region's nucleotide sequence