Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3074 and DvMF_3075 are separated by 300 nucleotides DvMF_3075 and DvMF_3076 overlap by 8 nucleotides
DvMF_3074: DvMF_3074 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 3,882,183 to 3,883,274
_3074
DvMF_3075: DvMF_3075 - signal transduction histidine kinase regulating citrate/malate metabolism (RefSeq), at 3,883,575 to 3,884,486
_3075
DvMF_3076: DvMF_3076 - metal dependent phosphohydrolase (RefSeq), at 3,884,479 to 3,885,705
_3076
Position (kb)
3883
3884
3885 Strain fitness (log2 ratio)
-2
-1
0
1 at 3882.606 kb on + strand, within DvMF_3074 at 3882.672 kb on - strand, within DvMF_3074 at 3882.711 kb on + strand, within DvMF_3074 at 3882.729 kb on + strand, within DvMF_3074 at 3882.778 kb on + strand, within DvMF_3074 at 3882.813 kb on - strand, within DvMF_3074 at 3882.860 kb on + strand, within DvMF_3074 at 3882.860 kb on + strand, within DvMF_3074 at 3882.908 kb on + strand, within DvMF_3074 at 3882.932 kb on + strand, within DvMF_3074 at 3882.966 kb on - strand, within DvMF_3074 at 3883.008 kb on + strand, within DvMF_3074 at 3883.369 kb on + strand at 3883.377 kb on - strand at 3883.647 kb on + strand at 3883.647 kb on + strand at 3883.680 kb on + strand, within DvMF_3075 at 3883.849 kb on - strand, within DvMF_3075 at 3883.862 kb on - strand, within DvMF_3075 at 3883.956 kb on + strand, within DvMF_3075 at 3883.987 kb on - strand, within DvMF_3075 at 3884.450 kb on + strand at 3884.566 kb on + strand at 3884.649 kb on - strand, within DvMF_3076 at 3885.012 kb on + strand, within DvMF_3076 at 3885.021 kb on - strand, within DvMF_3076 at 3885.183 kb on + strand, within DvMF_3076 at 3885.371 kb on - strand, within DvMF_3076
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 3,882,606 + DvMF_3074 0.39 -0.7 3,882,672 - DvMF_3074 0.45 -0.5 3,882,711 + DvMF_3074 0.48 -0.7 3,882,729 + DvMF_3074 0.50 -0.5 3,882,778 + DvMF_3074 0.54 -1.9 3,882,813 - DvMF_3074 0.58 -0.1 3,882,860 + DvMF_3074 0.62 -0.5 3,882,860 + DvMF_3074 0.62 -0.4 3,882,908 + DvMF_3074 0.66 +0.7 3,882,932 + DvMF_3074 0.69 -0.1 3,882,966 - DvMF_3074 0.72 -0.4 3,883,008 + DvMF_3074 0.76 -0.2 3,883,369 + +0.2 3,883,377 - -0.2 3,883,647 + -0.6 3,883,647 + -0.7 3,883,680 + DvMF_3075 0.12 -1.2 3,883,849 - DvMF_3075 0.30 -0.9 3,883,862 - DvMF_3075 0.31 -0.8 3,883,956 + DvMF_3075 0.42 -0.3 3,883,987 - DvMF_3075 0.45 -1.0 3,884,450 + -0.9 3,884,566 + +0.3 3,884,649 - DvMF_3076 0.14 +0.0 3,885,012 + DvMF_3076 0.43 -0.9 3,885,021 - DvMF_3076 0.44 -1.1 3,885,183 + DvMF_3076 0.57 -0.8 3,885,371 - DvMF_3076 0.73 -1.0
Or see this region's nucleotide sequence