Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2850 and DvMF_2851 are separated by 430 nucleotides DvMF_2851 and DvMF_2852 are separated by 421 nucleotides DvMF_2852 and DvMF_2853 overlap by 4 nucleotides
DvMF_2850: DvMF_2850 - hypothetical protein (RefSeq), at 3,602,422 to 3,603,507
_2850
DvMF_2851: DvMF_2851 - diguanylate cyclase and serine/threonine protein kinase with TPR repeats (RefSeq), at 3,603,938 to 3,606,361
_2851
DvMF_2852: DvMF_2852 - nitroreductase (RefSeq), at 3,606,783 to 3,607,319
_2852
DvMF_2853: DvMF_2853 - beta-lactamase domain protein (RefSeq), at 3,607,316 to 3,607,948
_2853
Position (kb)
3603
3604
3605
3606
3607 Strain fitness (log2 ratio)
-1
0
1 at 3603.132 kb on + strand, within DvMF_2850 at 3603.643 kb on + strand at 3603.643 kb on + strand at 3603.651 kb on - strand at 3603.651 kb on - strand at 3603.797 kb on + strand at 3603.994 kb on + strand at 3604.002 kb on + strand at 3604.193 kb on + strand, within DvMF_2851 at 3604.266 kb on + strand, within DvMF_2851 at 3604.432 kb on + strand, within DvMF_2851 at 3604.603 kb on - strand, within DvMF_2851 at 3604.608 kb on - strand, within DvMF_2851 at 3604.671 kb on + strand, within DvMF_2851 at 3604.837 kb on + strand, within DvMF_2851 at 3605.270 kb on + strand, within DvMF_2851 at 3605.318 kb on - strand, within DvMF_2851 at 3605.318 kb on - strand, within DvMF_2851 at 3605.380 kb on - strand, within DvMF_2851 at 3605.599 kb on - strand, within DvMF_2851 at 3605.599 kb on - strand, within DvMF_2851 at 3605.614 kb on + strand, within DvMF_2851 at 3605.671 kb on + strand, within DvMF_2851 at 3606.063 kb on + strand, within DvMF_2851 at 3606.081 kb on - strand, within DvMF_2851 at 3606.240 kb on - strand at 3606.301 kb on - strand at 3606.401 kb on - strand at 3606.577 kb on - strand at 3606.655 kb on + strand at 3607.201 kb on + strand, within DvMF_2852
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 3,603,132 + DvMF_2850 0.65 -0.1 3,603,643 + -0.2 3,603,643 + +0.2 3,603,651 - -0.4 3,603,651 - -0.3 3,603,797 + -0.4 3,603,994 + -0.9 3,604,002 + -0.6 3,604,193 + DvMF_2851 0.11 -0.6 3,604,266 + DvMF_2851 0.14 -1.1 3,604,432 + DvMF_2851 0.20 -0.5 3,604,603 - DvMF_2851 0.27 -0.4 3,604,608 - DvMF_2851 0.28 -0.4 3,604,671 + DvMF_2851 0.30 -0.9 3,604,837 + DvMF_2851 0.37 -1.1 3,605,270 + DvMF_2851 0.55 -0.8 3,605,318 - DvMF_2851 0.57 -0.5 3,605,318 - DvMF_2851 0.57 -0.7 3,605,380 - DvMF_2851 0.59 -1.1 3,605,599 - DvMF_2851 0.69 -0.6 3,605,599 - DvMF_2851 0.69 -0.6 3,605,614 + DvMF_2851 0.69 -0.6 3,605,671 + DvMF_2851 0.71 -0.6 3,606,063 + DvMF_2851 0.88 -1.6 3,606,081 - DvMF_2851 0.88 -0.5 3,606,240 - -0.7 3,606,301 - -0.8 3,606,401 - -0.1 3,606,577 - +0.1 3,606,655 + +0.3 3,607,201 + DvMF_2852 0.78 -0.2
Or see this region's nucleotide sequence