Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2395

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2394 and DvMF_2395 are separated by 173 nucleotidesDvMF_2395 and DvMF_2396 are separated by 146 nucleotides DvMF_2394: DvMF_2394 - hypothetical protein (RefSeq), at 3,026,504 to 3,026,854 _2394 DvMF_2395: DvMF_2395 - glycosyl transferase, group 2 family protein (RefSeq), at 3,027,028 to 3,028,716 _2395 DvMF_2396: DvMF_2396 - carbonic anhydrase (RefSeq), at 3,028,863 to 3,029,594 _2396 Position (kb) 3027 3028 3029Strain fitness (log2 ratio) -1 0 1at 3026.079 kb on - strandat 3026.403 kb on + strandat 3026.439 kb on - strandat 3026.564 kb on - strand, within DvMF_2394at 3026.581 kb on + strand, within DvMF_2394at 3026.581 kb on + strand, within DvMF_2394at 3026.581 kb on + strand, within DvMF_2394at 3026.716 kb on - strand, within DvMF_2394at 3027.014 kb on + strandat 3027.023 kb on + strandat 3027.083 kb on + strandat 3027.177 kb on + strandat 3027.185 kb on - strandat 3027.260 kb on - strand, within DvMF_2395at 3027.362 kb on + strand, within DvMF_2395at 3027.625 kb on - strand, within DvMF_2395at 3027.665 kb on - strand, within DvMF_2395at 3027.684 kb on - strand, within DvMF_2395at 3027.688 kb on - strand, within DvMF_2395at 3027.788 kb on + strand, within DvMF_2395at 3028.097 kb on + strand, within DvMF_2395at 3028.117 kb on - strand, within DvMF_2395at 3028.432 kb on + strand, within DvMF_2395at 3028.682 kb on + strandat 3029.096 kb on - strand, within DvMF_2396at 3029.156 kb on - strand, within DvMF_2396at 3029.354 kb on - strand, within DvMF_2396at 3029.401 kb on - strand, within DvMF_2396at 3029.519 kb on + strand, within DvMF_2396

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,026,079 - -0.4
3,026,403 + -0.2
3,026,439 - -0.2
3,026,564 - DvMF_2394 0.17 -0.5
3,026,581 + DvMF_2394 0.22 -0.3
3,026,581 + DvMF_2394 0.22 -0.4
3,026,581 + DvMF_2394 0.22 -0.2
3,026,716 - DvMF_2394 0.60 +0.5
3,027,014 + -0.4
3,027,023 + -0.3
3,027,083 + +0.0
3,027,177 + -0.2
3,027,185 - +0.0
3,027,260 - DvMF_2395 0.14 -0.4
3,027,362 + DvMF_2395 0.20 +0.2
3,027,625 - DvMF_2395 0.35 -0.5
3,027,665 - DvMF_2395 0.38 -0.2
3,027,684 - DvMF_2395 0.39 -0.3
3,027,688 - DvMF_2395 0.39 +0.9
3,027,788 + DvMF_2395 0.45 +0.2
3,028,097 + DvMF_2395 0.63 -0.1
3,028,117 - DvMF_2395 0.64 +0.2
3,028,432 + DvMF_2395 0.83 -0.1
3,028,682 + -0.2
3,029,096 - DvMF_2396 0.32 +0.2
3,029,156 - DvMF_2396 0.40 -0.1
3,029,354 - DvMF_2396 0.67 -0.4
3,029,401 - DvMF_2396 0.73 -0.1
3,029,519 + DvMF_2396 0.90 -0.3

Or see this region's nucleotide sequence