Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2364 and DvMF_2365 are separated by 611 nucleotides DvMF_2365 and DvMF_2366 are separated by 212 nucleotides
DvMF_2364: DvMF_2364 - protein TolQ (RefSeq), at 2,984,250 to 2,984,945
_2364
DvMF_2365: DvMF_2365 - outer membrane efflux protein (RefSeq), at 2,985,557 to 2,987,005
_2365
DvMF_2366: DvMF_2366 - ferric uptake regulator, Fur family (RefSeq), at 2,987,218 to 2,987,613
_2366
Position (kb)
2985
2986
2987
2988 Strain fitness (log2 ratio)
-2
-1
0
1 at 2984.980 kb on - strand at 2985.052 kb on + strand at 2985.057 kb on + strand at 2985.082 kb on + strand at 2985.095 kb on - strand at 2985.105 kb on - strand at 2985.189 kb on + strand at 2985.197 kb on - strand at 2985.645 kb on + strand at 2985.645 kb on + strand at 2985.658 kb on - strand at 2985.658 kb on - strand at 2986.082 kb on + strand, within DvMF_2365 at 2986.090 kb on - strand, within DvMF_2365 at 2986.134 kb on - strand, within DvMF_2365 at 2986.259 kb on - strand, within DvMF_2365 at 2986.285 kb on - strand, within DvMF_2365 at 2986.566 kb on - strand, within DvMF_2365 at 2986.646 kb on + strand, within DvMF_2365 at 2986.665 kb on - strand, within DvMF_2365 at 2986.739 kb on + strand, within DvMF_2365 at 2986.863 kb on - strand at 2986.913 kb on + strand at 2986.999 kb on + strand at 2987.032 kb on - strand at 2987.124 kb on + strand at 2987.350 kb on - strand, within DvMF_2366 at 2987.639 kb on - strand at 2987.670 kb on - strand at 2987.715 kb on + strand at 2987.762 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 2,984,980 - -0.1 2,985,052 + -0.5 2,985,057 + -0.0 2,985,082 + +0.2 2,985,095 - -0.4 2,985,105 - -0.2 2,985,189 + +0.0 2,985,197 - +0.2 2,985,645 + -1.1 2,985,645 + -0.5 2,985,658 - -0.4 2,985,658 - -1.2 2,986,082 + DvMF_2365 0.36 -0.5 2,986,090 - DvMF_2365 0.37 -1.3 2,986,134 - DvMF_2365 0.40 -0.9 2,986,259 - DvMF_2365 0.48 -0.8 2,986,285 - DvMF_2365 0.50 -0.8 2,986,566 - DvMF_2365 0.70 -0.9 2,986,646 + DvMF_2365 0.75 -0.8 2,986,665 - DvMF_2365 0.76 -2.3 2,986,739 + DvMF_2365 0.82 -1.4 2,986,863 - -0.6 2,986,913 + -1.7 2,986,999 + -0.4 2,987,032 - -1.1 2,987,124 + -0.1 2,987,350 - DvMF_2366 0.33 +1.4 2,987,639 - -0.6 2,987,670 - -0.6 2,987,715 + +0.1 2,987,762 + -0.2
Or see this region's nucleotide sequence