Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2334

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2333 and DvMF_2334 overlap by 1 nucleotidesDvMF_2334 and DvMF_2335 are separated by 219 nucleotides DvMF_2333: DvMF_2333 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,940,460 to 2,942,283 _2333 DvMF_2334: DvMF_2334 - response regulator receiver protein (RefSeq), at 2,942,283 to 2,942,738 _2334 DvMF_2335: DvMF_2335 - peptidase M50 (RefSeq), at 2,942,958 to 2,943,632 _2335 Position (kb) 2942 2943Strain fitness (log2 ratio) -1 0 1at 2941.300 kb on + strand, within DvMF_2333at 2941.652 kb on + strand, within DvMF_2333at 2941.772 kb on + strand, within DvMF_2333at 2941.863 kb on - strand, within DvMF_2333at 2941.885 kb on - strand, within DvMF_2333at 2941.950 kb on + strand, within DvMF_2333at 2942.018 kb on + strand, within DvMF_2333at 2942.026 kb on - strand, within DvMF_2333at 2942.074 kb on - strand, within DvMF_2333at 2942.305 kb on - strandat 2942.553 kb on - strand, within DvMF_2334at 2942.698 kb on + strandat 2942.790 kb on + strandat 2942.812 kb on + strandat 2943.068 kb on - strand, within DvMF_2335at 2943.246 kb on + strand, within DvMF_2335at 2943.472 kb on + strand, within DvMF_2335at 2943.522 kb on + strand, within DvMF_2335at 2943.571 kb on - strandat 2943.651 kb on + strandat 2943.651 kb on + strandat 2943.651 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,941,300 + DvMF_2333 0.46 -1.3
2,941,652 + DvMF_2333 0.65 -0.4
2,941,772 + DvMF_2333 0.72 -0.7
2,941,863 - DvMF_2333 0.77 -0.2
2,941,885 - DvMF_2333 0.78 -0.6
2,941,950 + DvMF_2333 0.82 -0.3
2,942,018 + DvMF_2333 0.85 -0.1
2,942,026 - DvMF_2333 0.86 -0.3
2,942,074 - DvMF_2333 0.88 -0.7
2,942,305 - -0.5
2,942,553 - DvMF_2334 0.59 -1.1
2,942,698 + -0.3
2,942,790 + -0.3
2,942,812 + -0.2
2,943,068 - DvMF_2335 0.16 +0.0
2,943,246 + DvMF_2335 0.43 -0.2
2,943,472 + DvMF_2335 0.76 +0.1
2,943,522 + DvMF_2335 0.84 -0.8
2,943,571 - +0.2
2,943,651 + +0.1
2,943,651 + -0.3
2,943,651 + -0.1

Or see this region's nucleotide sequence