Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2275 and DvMF_2276 are separated by 388 nucleotides DvMF_2276 and DvMF_2277 are separated by 4 nucleotides
DvMF_2275: DvMF_2275 - metal dependent phosphohydrolase (RefSeq), at 2,861,444 to 2,862,181
_2275
DvMF_2276: DvMF_2276 - hydrogenase formation HypD protein (RefSeq), at 2,862,570 to 2,863,667
_2276
DvMF_2277: DvMF_2277 - hydrogenase expression/formation protein HypE (RefSeq), at 2,863,672 to 2,864,697
_2277
Position (kb)
2862
2863
2864 Strain fitness (log2 ratio)
-2
-1
0
1 at 2861.731 kb on + strand, within DvMF_2275 at 2861.813 kb on + strand, within DvMF_2275 at 2861.820 kb on + strand, within DvMF_2275 at 2861.833 kb on - strand, within DvMF_2275 at 2861.863 kb on - strand, within DvMF_2275 at 2861.888 kb on + strand, within DvMF_2275 at 2861.896 kb on - strand, within DvMF_2275 at 2861.926 kb on - strand, within DvMF_2275 at 2861.941 kb on - strand, within DvMF_2275 at 2861.959 kb on + strand, within DvMF_2275 at 2862.047 kb on - strand, within DvMF_2275 at 2862.047 kb on - strand, within DvMF_2275 at 2862.062 kb on - strand, within DvMF_2275 at 2862.159 kb on + strand at 2862.197 kb on - strand at 2862.319 kb on - strand at 2862.462 kb on + strand at 2862.888 kb on - strand, within DvMF_2276 at 2863.268 kb on + strand, within DvMF_2276 at 2863.374 kb on + strand, within DvMF_2276 at 2864.224 kb on + strand, within DvMF_2277
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 2,861,731 + DvMF_2275 0.39 -0.4 2,861,813 + DvMF_2275 0.50 -0.3 2,861,820 + DvMF_2275 0.51 -0.1 2,861,833 - DvMF_2275 0.53 -0.3 2,861,863 - DvMF_2275 0.57 -0.1 2,861,888 + DvMF_2275 0.60 +0.7 2,861,896 - DvMF_2275 0.61 +0.0 2,861,926 - DvMF_2275 0.65 -0.3 2,861,941 - DvMF_2275 0.67 +0.3 2,861,959 + DvMF_2275 0.70 -0.2 2,862,047 - DvMF_2275 0.82 -0.3 2,862,047 - DvMF_2275 0.82 -0.3 2,862,062 - DvMF_2275 0.84 -0.4 2,862,159 + -0.1 2,862,197 - -0.1 2,862,319 - -0.3 2,862,462 + +0.1 2,862,888 - DvMF_2276 0.29 -2.7 2,863,268 + DvMF_2276 0.64 +1.3 2,863,374 + DvMF_2276 0.73 -1.8 2,864,224 + DvMF_2277 0.54 +0.1
Or see this region's nucleotide sequence