Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2155

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2154 and DvMF_2155 are separated by 227 nucleotidesDvMF_2155 and DvMF_2156 are separated by 9 nucleotides DvMF_2154: DvMF_2154 - alanine dehydrogenase (RefSeq), at 2,684,493 to 2,685,608 _2154 DvMF_2155: DvMF_2155 - ABC-2 type transporter (RefSeq), at 2,685,836 to 2,687,143 _2155 DvMF_2156: DvMF_2156 - ABC transporter related (RefSeq), at 2,687,153 to 2,690,473 _2156 Position (kb) 2685 2686 2687 2688Strain fitness (log2 ratio) -1 0 1at 2684.986 kb on + strand, within DvMF_2154at 2685.108 kb on - strand, within DvMF_2154at 2685.372 kb on + strand, within DvMF_2154at 2685.372 kb on + strand, within DvMF_2154at 2685.415 kb on + strand, within DvMF_2154at 2685.434 kb on - strand, within DvMF_2154at 2685.710 kb on - strandat 2685.994 kb on + strand, within DvMF_2155at 2686.151 kb on - strand, within DvMF_2155at 2686.159 kb on + strand, within DvMF_2155at 2686.179 kb on - strand, within DvMF_2155at 2686.446 kb on - strand, within DvMF_2155at 2686.468 kb on + strand, within DvMF_2155at 2686.589 kb on + strand, within DvMF_2155at 2686.816 kb on - strand, within DvMF_2155at 2686.886 kb on - strand, within DvMF_2155at 2687.156 kb on + strandat 2687.323 kb on + strandat 2687.451 kb on + strandat 2687.769 kb on + strand, within DvMF_2156at 2687.804 kb on - strand, within DvMF_2156at 2687.871 kb on + strand, within DvMF_2156

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
2,684,986 + DvMF_2154 0.44 -0.4
2,685,108 - DvMF_2154 0.55 -0.6
2,685,372 + DvMF_2154 0.79 +0.1
2,685,372 + DvMF_2154 0.79 -0.6
2,685,415 + DvMF_2154 0.83 -0.2
2,685,434 - DvMF_2154 0.84 -0.5
2,685,710 - -0.5
2,685,994 + DvMF_2155 0.12 -1.1
2,686,151 - DvMF_2155 0.24 -1.2
2,686,159 + DvMF_2155 0.25 -1.3
2,686,179 - DvMF_2155 0.26 -1.1
2,686,446 - DvMF_2155 0.47 -0.8
2,686,468 + DvMF_2155 0.48 -1.1
2,686,589 + DvMF_2155 0.58 -1.6
2,686,816 - DvMF_2155 0.75 -0.9
2,686,886 - DvMF_2155 0.80 -1.4
2,687,156 + -0.7
2,687,323 + -1.1
2,687,451 + -1.6
2,687,769 + DvMF_2156 0.19 -0.6
2,687,804 - DvMF_2156 0.20 -0.8
2,687,871 + DvMF_2156 0.22 -0.9

Or see this region's nucleotide sequence