Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1858 and DvMF_1859 are separated by 5 nucleotides DvMF_1859 and DvMF_1860 are separated by 670 nucleotides
DvMF_1858: DvMF_1858 - multi-sensor hybrid histidine kinase (RefSeq), at 2,272,085 to 2,275,660
_1858
DvMF_1859: DvMF_1859 - putative two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,275,666 to 2,277,165
_1859
DvMF_1860: DvMF_1860 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein (RefSeq), at 2,277,836 to 2,281,483
_1860
Position (kb)
2275
2276
2277
2278 Strain fitness (log2 ratio)
-1
0
1 at 2275.001 kb on - strand, within DvMF_1858 at 2275.003 kb on + strand, within DvMF_1858 at 2275.134 kb on + strand, within DvMF_1858 at 2275.335 kb on - strand at 2275.360 kb on + strand at 2275.368 kb on - strand at 2275.473 kb on + strand at 2275.481 kb on - strand at 2275.994 kb on + strand, within DvMF_1859 at 2276.068 kb on + strand, within DvMF_1859 at 2276.519 kb on + strand, within DvMF_1859 at 2276.940 kb on + strand, within DvMF_1859 at 2276.941 kb on - strand, within DvMF_1859 at 2277.128 kb on + strand at 2277.128 kb on + strand at 2277.134 kb on - strand at 2277.136 kb on - strand at 2277.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 2,275,001 - DvMF_1858 0.82 +0.1 2,275,003 + DvMF_1858 0.82 +0.7 2,275,134 + DvMF_1858 0.85 -0.5 2,275,335 - -0.6 2,275,360 + -0.4 2,275,368 - -0.6 2,275,473 + -0.1 2,275,481 - -0.4 2,275,994 + DvMF_1859 0.22 -0.8 2,276,068 + DvMF_1859 0.27 +0.2 2,276,519 + DvMF_1859 0.57 -0.2 2,276,940 + DvMF_1859 0.85 -1.0 2,276,941 - DvMF_1859 0.85 -0.3 2,277,128 + +0.2 2,277,128 + -0.4 2,277,134 - -0.5 2,277,136 - -0.4 2,277,650 - -0.4
Or see this region's nucleotide sequence