Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1786 and DvMF_1787 are separated by 224 nucleotides DvMF_1787 and DvMF_1788 are separated by 441 nucleotides
DvMF_1786: DvMF_1786 - protein of unknown function DUF523 (RefSeq), at 2,185,751 to 2,186,758
_1786
DvMF_1787: DvMF_1787 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,186,983 to 2,187,639
_1787
DvMF_1788: DvMF_1788 - SNARE associated Golgi protein (RefSeq), at 2,188,081 to 2,189,025
_1788
Position (kb)
2186
2187
2188 Strain fitness (log2 ratio)
-1
0
1 at 2186.052 kb on - strand, within DvMF_1786 at 2186.388 kb on + strand, within DvMF_1786 at 2186.485 kb on + strand, within DvMF_1786 at 2186.485 kb on + strand, within DvMF_1786 at 2186.485 kb on + strand, within DvMF_1786 at 2186.618 kb on - strand, within DvMF_1786 at 2186.646 kb on - strand, within DvMF_1786 at 2186.715 kb on - strand at 2186.733 kb on - strand at 2186.937 kb on - strand at 2187.426 kb on + strand, within DvMF_1787 at 2187.434 kb on - strand, within DvMF_1787 at 2187.478 kb on + strand, within DvMF_1787 at 2187.527 kb on - strand, within DvMF_1787 at 2187.801 kb on + strand at 2187.808 kb on + strand at 2187.840 kb on - strand at 2187.883 kb on + strand at 2187.950 kb on - strand at 2187.979 kb on - strand at 2187.981 kb on + strand at 2188.011 kb on - strand at 2188.229 kb on + strand, within DvMF_1788 at 2188.247 kb on + strand, within DvMF_1788 at 2188.370 kb on - strand, within DvMF_1788 at 2188.542 kb on - strand, within DvMF_1788
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 2,186,052 - DvMF_1786 0.30 -0.1 2,186,388 + DvMF_1786 0.63 -0.6 2,186,485 + DvMF_1786 0.73 -0.6 2,186,485 + DvMF_1786 0.73 -0.1 2,186,485 + DvMF_1786 0.73 -0.2 2,186,618 - DvMF_1786 0.86 -0.2 2,186,646 - DvMF_1786 0.89 -0.3 2,186,715 - +0.0 2,186,733 - +0.8 2,186,937 - -0.2 2,187,426 + DvMF_1787 0.67 -1.3 2,187,434 - DvMF_1787 0.69 -0.9 2,187,478 + DvMF_1787 0.75 -1.0 2,187,527 - DvMF_1787 0.83 -0.4 2,187,801 + -0.4 2,187,808 + -0.5 2,187,840 - +0.6 2,187,883 + -0.1 2,187,950 - -0.3 2,187,979 - -0.4 2,187,981 + -0.3 2,188,011 - -0.1 2,188,229 + DvMF_1788 0.16 -0.2 2,188,247 + DvMF_1788 0.18 -0.6 2,188,370 - DvMF_1788 0.31 -0.2 2,188,542 - DvMF_1788 0.49 -0.3
Or see this region's nucleotide sequence