Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1722 and DvMF_1723 are separated by 269 nucleotides DvMF_1723 and DvMF_1724 are separated by 109 nucleotides DvMF_1724 and DvMF_1725 are separated by 70 nucleotides
DvMF_1722: DvMF_1722 - phosphoribosylamine--glycine ligase (RefSeq), at 2,106,509 to 2,107,786
_1722
DvMF_1723: DvMF_1723 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 2,108,056 to 2,108,556
_1723
DvMF_1724: DvMF_1724 - no description, at 2,108,666 to 2,108,806
_1724
DvMF_1725: DvMF_1725 - protein of unknown function UPF0150 (RefSeq), at 2,108,877 to 2,109,284
_1725
Position (kb)
2108
2109 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2107.209 kb on + strand, within DvMF_1722 at 2107.273 kb on - strand, within DvMF_1722 at 2107.287 kb on - strand, within DvMF_1722 at 2107.867 kb on + strand at 2108.100 kb on - strand at 2108.102 kb on + strand at 2108.102 kb on + strand at 2108.102 kb on + strand at 2108.110 kb on - strand, within DvMF_1723 at 2108.110 kb on - strand, within DvMF_1723 at 2108.403 kb on - strand, within DvMF_1723 at 2108.413 kb on - strand, within DvMF_1723 at 2108.583 kb on + strand at 2108.583 kb on + strand at 2108.917 kb on + strand at 2108.958 kb on - strand, within DvMF_1725 at 2108.989 kb on + strand, within DvMF_1725 at 2109.034 kb on + strand, within DvMF_1725 at 2109.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 2,107,209 + DvMF_1722 0.55 -1.4 2,107,273 - DvMF_1722 0.60 -1.1 2,107,287 - DvMF_1722 0.61 -0.6 2,107,867 + -0.4 2,108,100 - -1.2 2,108,102 + -0.7 2,108,102 + -2.7 2,108,102 + -2.3 2,108,110 - DvMF_1723 0.11 -0.8 2,108,110 - DvMF_1723 0.11 -2.4 2,108,403 - DvMF_1723 0.69 -3.2 2,108,413 - DvMF_1723 0.71 -2.3 2,108,583 + -0.3 2,108,583 + -0.3 2,108,917 + -0.4 2,108,958 - DvMF_1725 0.20 +0.8 2,108,989 + DvMF_1725 0.27 -0.6 2,109,034 + DvMF_1725 0.38 -0.4 2,109,390 - +0.4
Or see this region's nucleotide sequence