Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1540 and DvMF_1541 are separated by 36 nucleotides DvMF_1541 and DvMF_1542 are separated by 222 nucleotides DvMF_1542 and DvMF_1543 are separated by 346 nucleotides
DvMF_1540: DvMF_1540 - H(+)-transporting two-sector ATPase (RefSeq), at 1,901,070 to 1,902,434
_1540
DvMF_1541: DvMF_1541 - TrkA-N domain protein (RefSeq), at 1,902,471 to 1,903,136
_1541
DvMF_1542: DvMF_1542 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,903,359 to 1,904,237
_1542
DvMF_1543: DvMF_1543 - rare lipoprotein A (RefSeq), at 1,904,584 to 1,905,237
_1543
Position (kb)
1903
1904
1905 Strain fitness (log2 ratio)
-1
0
1 at 1902.526 kb on + strand at 1902.546 kb on - strand, within DvMF_1541 at 1902.619 kb on - strand, within DvMF_1541 at 1903.165 kb on - strand at 1903.186 kb on - strand at 1903.316 kb on - strand at 1903.755 kb on + strand, within DvMF_1542 at 1903.781 kb on - strand, within DvMF_1542 at 1903.797 kb on - strand, within DvMF_1542 at 1903.808 kb on - strand, within DvMF_1542 at 1903.888 kb on + strand, within DvMF_1542 at 1903.896 kb on - strand, within DvMF_1542 at 1904.249 kb on - strand at 1904.447 kb on - strand at 1904.936 kb on + strand, within DvMF_1543
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,902,526 + -0.3 1,902,546 - DvMF_1541 0.11 -0.2 1,902,619 - DvMF_1541 0.22 -0.1 1,903,165 - -0.2 1,903,186 - -0.6 1,903,316 - -0.2 1,903,755 + DvMF_1542 0.45 +0.0 1,903,781 - DvMF_1542 0.48 -0.3 1,903,797 - DvMF_1542 0.50 -0.2 1,903,808 - DvMF_1542 0.51 -0.4 1,903,888 + DvMF_1542 0.60 +0.7 1,903,896 - DvMF_1542 0.61 -0.1 1,904,249 - -0.2 1,904,447 - -0.3 1,904,936 + DvMF_1543 0.54 -0.1
Or see this region's nucleotide sequence