Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1507 and DvMF_1508 are separated by 158 nucleotides DvMF_1508 and DvMF_1509 are separated by 95 nucleotides DvMF_1509 and DvMF_1510 are separated by 384 nucleotides
DvMF_1507: DvMF_1507 - Extradiol ring-cleavage dioxygenase class III protein subunit B (RefSeq), at 1,859,336 to 1,860,139
_1507
DvMF_1508: DvMF_1508 - hypothetical protein (RefSeq), at 1,860,298 to 1,860,729
_1508
DvMF_1509: DvMF_1509 - hypothetical protein (RefSeq), at 1,860,825 to 1,861,259
_1509
DvMF_1510: DvMF_1510 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,861,644 to 1,863,056
_1510
Position (kb)
1860
1861
1862 Strain fitness (log2 ratio)
-1
0
1 at 1859.892 kb on + strand, within DvMF_1507 at 1859.951 kb on + strand, within DvMF_1507 at 1859.971 kb on + strand, within DvMF_1507 at 1860.040 kb on + strand, within DvMF_1507 at 1860.399 kb on + strand, within DvMF_1508 at 1860.541 kb on + strand, within DvMF_1508 at 1860.744 kb on - strand at 1860.755 kb on + strand at 1860.755 kb on + strand at 1860.763 kb on - strand at 1860.764 kb on - strand at 1860.822 kb on + strand at 1860.962 kb on + strand, within DvMF_1509 at 1861.099 kb on - strand, within DvMF_1509 at 1861.593 kb on - strand at 1861.643 kb on - strand at 1861.735 kb on - strand at 1861.935 kb on - strand, within DvMF_1510 at 1862.142 kb on - strand, within DvMF_1510 at 1862.223 kb on + strand, within DvMF_1510 at 1862.238 kb on - strand, within DvMF_1510 at 1862.259 kb on + strand, within DvMF_1510
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,859,892 + DvMF_1507 0.69 -1.4 1,859,951 + DvMF_1507 0.76 -0.6 1,859,971 + DvMF_1507 0.79 +0.2 1,860,040 + DvMF_1507 0.88 +0.3 1,860,399 + DvMF_1508 0.23 -0.2 1,860,541 + DvMF_1508 0.56 -0.1 1,860,744 - -1.1 1,860,755 + -0.2 1,860,755 + +0.0 1,860,763 - -0.5 1,860,764 - -0.5 1,860,822 + -0.4 1,860,962 + DvMF_1509 0.31 -0.6 1,861,099 - DvMF_1509 0.63 -1.4 1,861,593 - -0.2 1,861,643 - -0.3 1,861,735 - -0.0 1,861,935 - DvMF_1510 0.21 -0.3 1,862,142 - DvMF_1510 0.35 -0.6 1,862,223 + DvMF_1510 0.41 -0.3 1,862,238 - DvMF_1510 0.42 -0.5 1,862,259 + DvMF_1510 0.44 -0.1
Or see this region's nucleotide sequence