Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1509

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1507 and DvMF_1508 are separated by 158 nucleotidesDvMF_1508 and DvMF_1509 are separated by 95 nucleotidesDvMF_1509 and DvMF_1510 are separated by 384 nucleotides DvMF_1507: DvMF_1507 - Extradiol ring-cleavage dioxygenase class III protein subunit B (RefSeq), at 1,859,336 to 1,860,139 _1507 DvMF_1508: DvMF_1508 - hypothetical protein (RefSeq), at 1,860,298 to 1,860,729 _1508 DvMF_1509: DvMF_1509 - hypothetical protein (RefSeq), at 1,860,825 to 1,861,259 _1509 DvMF_1510: DvMF_1510 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,861,644 to 1,863,056 _1510 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -1 0 1at 1859.892 kb on + strand, within DvMF_1507at 1859.951 kb on + strand, within DvMF_1507at 1859.971 kb on + strand, within DvMF_1507at 1860.040 kb on + strand, within DvMF_1507at 1860.399 kb on + strand, within DvMF_1508at 1860.541 kb on + strand, within DvMF_1508at 1860.744 kb on - strandat 1860.755 kb on + strandat 1860.755 kb on + strandat 1860.763 kb on - strandat 1860.764 kb on - strandat 1860.822 kb on + strandat 1860.962 kb on + strand, within DvMF_1509at 1861.099 kb on - strand, within DvMF_1509at 1861.593 kb on - strandat 1861.643 kb on - strandat 1861.735 kb on - strandat 1861.935 kb on - strand, within DvMF_1510at 1862.142 kb on - strand, within DvMF_1510at 1862.223 kb on + strand, within DvMF_1510at 1862.238 kb on - strand, within DvMF_1510at 1862.259 kb on + strand, within DvMF_1510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
1,859,892 + DvMF_1507 0.69 -1.4
1,859,951 + DvMF_1507 0.76 -0.6
1,859,971 + DvMF_1507 0.79 +0.2
1,860,040 + DvMF_1507 0.88 +0.3
1,860,399 + DvMF_1508 0.23 -0.2
1,860,541 + DvMF_1508 0.56 -0.1
1,860,744 - -1.1
1,860,755 + -0.2
1,860,755 + +0.0
1,860,763 - -0.5
1,860,764 - -0.5
1,860,822 + -0.4
1,860,962 + DvMF_1509 0.31 -0.6
1,861,099 - DvMF_1509 0.63 -1.4
1,861,593 - -0.2
1,861,643 - -0.3
1,861,735 - -0.0
1,861,935 - DvMF_1510 0.21 -0.3
1,862,142 - DvMF_1510 0.35 -0.6
1,862,223 + DvMF_1510 0.41 -0.3
1,862,238 - DvMF_1510 0.42 -0.5
1,862,259 + DvMF_1510 0.44 -0.1

Or see this region's nucleotide sequence