Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1338 and DvMF_1339 are separated by 186 nucleotides DvMF_1339 and DvMF_1340 are separated by 181 nucleotides DvMF_1340 and DvMF_1341 are separated by 141 nucleotides
DvMF_1338: DvMF_1338 - metal dependent phosphohydrolase (RefSeq), at 1,632,955 to 1,634,310
_1338
DvMF_1339: DvMF_1339 - molybdenum cofactor synthesis domain protein (RefSeq), at 1,634,497 to 1,635,312
_1339
DvMF_1340: DvMF_1340 - hypothetical protein (RefSeq), at 1,635,494 to 1,635,907
_1340
DvMF_1341: DvMF_1341 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,636,049 to 1,636,786
_1341
Position (kb)
1634
1635
1636 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1633.547 kb on + strand, within DvMF_1338 at 1633.548 kb on - strand, within DvMF_1338 at 1633.628 kb on + strand, within DvMF_1338 at 1633.827 kb on - strand, within DvMF_1338 at 1634.073 kb on + strand, within DvMF_1338 at 1634.180 kb on - strand at 1634.608 kb on + strand, within DvMF_1339 at 1635.161 kb on - strand, within DvMF_1339 at 1635.195 kb on - strand, within DvMF_1339 at 1635.422 kb on + strand at 1635.595 kb on + strand, within DvMF_1340 at 1635.676 kb on + strand, within DvMF_1340 at 1635.684 kb on - strand, within DvMF_1340 at 1636.017 kb on + strand at 1636.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,633,547 + DvMF_1338 0.44 -0.5 1,633,548 - DvMF_1338 0.44 -0.3 1,633,628 + DvMF_1338 0.50 -0.3 1,633,827 - DvMF_1338 0.64 -1.0 1,634,073 + DvMF_1338 0.82 -0.4 1,634,180 - -0.4 1,634,608 + DvMF_1339 0.14 -0.4 1,635,161 - DvMF_1339 0.81 -1.8 1,635,195 - DvMF_1339 0.86 -3.4 1,635,422 + -0.5 1,635,595 + DvMF_1340 0.24 -0.8 1,635,676 + DvMF_1340 0.44 -0.5 1,635,684 - DvMF_1340 0.46 -0.7 1,636,017 + +0.1 1,636,119 - -0.4
Or see this region's nucleotide sequence