Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1268

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1265 and DvMF_1266 are separated by 2 nucleotidesDvMF_1266 and DvMF_1267 are separated by 2 nucleotidesDvMF_1267 and DvMF_1268 overlap by 1 nucleotidesDvMF_1268 and DvMF_1269 are separated by 16 nucleotidesDvMF_1269 and DvMF_1270 are separated by 91 nucleotidesDvMF_1270 and DvMF_1271 overlap by 4 nucleotides DvMF_1265: DvMF_1265 - bacteriophage DNA transposition B protein, putative (RefSeq), at 1,562,812 to 1,563,513 _1265 DvMF_1266: DvMF_1266 - hypothetical protein (RefSeq), at 1,563,516 to 1,564,160 _1266 DvMF_1267: DvMF_1267 - hypothetical protein (RefSeq), at 1,564,163 to 1,564,372 _1267 DvMF_1268: DvMF_1268 - Mu Gam family protein (RefSeq), at 1,564,372 to 1,564,881 _1268 DvMF_1269: DvMF_1269 - hypothetical protein (RefSeq), at 1,564,898 to 1,565,188 _1269 DvMF_1270: DvMF_1270 - hypothetical protein (RefSeq), at 1,565,280 to 1,565,729 _1270 DvMF_1271: DvMF_1271 - hypothetical protein (RefSeq), at 1,565,726 to 1,566,229 _1271 Position (kb) 1564 1565Strain fitness (log2 ratio) -1 0 1at 1563.488 kb on - strandat 1563.610 kb on + strand, within DvMF_1266at 1563.618 kb on - strand, within DvMF_1266at 1563.716 kb on + strand, within DvMF_1266at 1563.724 kb on + strand, within DvMF_1266at 1563.724 kb on + strand, within DvMF_1266at 1563.724 kb on + strand, within DvMF_1266at 1563.752 kb on - strand, within DvMF_1266at 1563.907 kb on + strand, within DvMF_1266at 1563.957 kb on - strand, within DvMF_1266at 1564.077 kb on - strand, within DvMF_1266at 1564.128 kb on - strandat 1564.185 kb on - strand, within DvMF_1267at 1564.380 kb on + strandat 1564.388 kb on - strandat 1564.693 kb on - strand, within DvMF_1268at 1564.832 kb on - strandat 1564.869 kb on - strandat 1564.901 kb on + strandat 1564.909 kb on - strandat 1564.970 kb on - strand, within DvMF_1269at 1565.121 kb on - strand, within DvMF_1269at 1565.393 kb on - strand, within DvMF_1270at 1565.503 kb on + strand, within DvMF_1270at 1565.516 kb on - strand, within DvMF_1270at 1565.526 kb on - strand, within DvMF_1270at 1565.755 kb on + strandat 1565.842 kb on + strand, within DvMF_1271

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,563,488 - -0.5
1,563,610 + DvMF_1266 0.15 +0.0
1,563,618 - DvMF_1266 0.16 +0.0
1,563,716 + DvMF_1266 0.31 +0.6
1,563,724 + DvMF_1266 0.32 -0.6
1,563,724 + DvMF_1266 0.32 -0.4
1,563,724 + DvMF_1266 0.32 -0.1
1,563,752 - DvMF_1266 0.37 -0.1
1,563,907 + DvMF_1266 0.61 +0.2
1,563,957 - DvMF_1266 0.68 -0.3
1,564,077 - DvMF_1266 0.87 +0.2
1,564,128 - +0.2
1,564,185 - DvMF_1267 0.10 -0.1
1,564,380 + -0.4
1,564,388 - -0.5
1,564,693 - DvMF_1268 0.63 -0.8
1,564,832 - -0.2
1,564,869 - -0.3
1,564,901 + +1.2
1,564,909 - -0.2
1,564,970 - DvMF_1269 0.25 -0.5
1,565,121 - DvMF_1269 0.77 -0.1
1,565,393 - DvMF_1270 0.25 -0.1
1,565,503 + DvMF_1270 0.50 -0.5
1,565,516 - DvMF_1270 0.52 -0.4
1,565,526 - DvMF_1270 0.55 -0.5
1,565,755 + -1.0
1,565,842 + DvMF_1271 0.23 -0.4

Or see this region's nucleotide sequence