Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1042 and DvMF_1043 are separated by 290 nucleotides DvMF_1043 and DvMF_1044 are separated by 71 nucleotides DvMF_1044 and DvMF_1045 are separated by 41 nucleotides
DvMF_1042: DvMF_1042 - hypothetical protein (RefSeq), at 1,266,843 to 1,267,562
_1042
DvMF_1043: DvMF_1043 - Substrate-binding region of ABC-type glycine betaine transport system (RefSeq), at 1,267,853 to 1,268,716
_1043
DvMF_1044: DvMF_1044 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,268,788 to 1,269,630
_1044
DvMF_1045: DvMF_1045 - glycine betaine/L-proline ABC transporter, ATPase subunit (RefSeq), at 1,269,672 to 1,270,865
_1045
Position (kb)
1267
1268
1269 Strain fitness (log2 ratio)
-1
0
1 at 1266.936 kb on - strand, within DvMF_1042 at 1267.327 kb on - strand, within DvMF_1042 at 1267.530 kb on - strand at 1267.578 kb on - strand at 1267.698 kb on - strand at 1267.698 kb on - strand at 1267.872 kb on - strand at 1268.066 kb on + strand, within DvMF_1043 at 1268.583 kb on + strand, within DvMF_1043 at 1268.608 kb on - strand, within DvMF_1043 at 1268.779 kb on + strand at 1268.854 kb on + strand at 1269.312 kb on - strand, within DvMF_1044 at 1269.703 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,266,936 - DvMF_1042 0.13 +0.5 1,267,327 - DvMF_1042 0.67 +0.2 1,267,530 - -0.2 1,267,578 - -0.4 1,267,698 - -0.3 1,267,698 - -1.0 1,267,872 - -0.3 1,268,066 + DvMF_1043 0.25 -0.7 1,268,583 + DvMF_1043 0.84 -1.6 1,268,608 - DvMF_1043 0.87 -0.4 1,268,779 + -0.2 1,268,854 + -1.0 1,269,312 - DvMF_1044 0.62 -1.1 1,269,703 + -0.5
Or see this region's nucleotide sequence