Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1043

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1042 and DvMF_1043 are separated by 290 nucleotidesDvMF_1043 and DvMF_1044 are separated by 71 nucleotidesDvMF_1044 and DvMF_1045 are separated by 41 nucleotides DvMF_1042: DvMF_1042 - hypothetical protein (RefSeq), at 1,266,843 to 1,267,562 _1042 DvMF_1043: DvMF_1043 - Substrate-binding region of ABC-type glycine betaine transport system (RefSeq), at 1,267,853 to 1,268,716 _1043 DvMF_1044: DvMF_1044 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,268,788 to 1,269,630 _1044 DvMF_1045: DvMF_1045 - glycine betaine/L-proline ABC transporter, ATPase subunit (RefSeq), at 1,269,672 to 1,270,865 _1045 Position (kb) 1267 1268 1269Strain fitness (log2 ratio) -1 0 1at 1266.936 kb on - strand, within DvMF_1042at 1267.327 kb on - strand, within DvMF_1042at 1267.530 kb on - strandat 1267.578 kb on - strandat 1267.698 kb on - strandat 1267.698 kb on - strandat 1267.872 kb on - strandat 1268.066 kb on + strand, within DvMF_1043at 1268.583 kb on + strand, within DvMF_1043at 1268.608 kb on - strand, within DvMF_1043at 1268.779 kb on + strandat 1268.854 kb on + strandat 1269.312 kb on - strand, within DvMF_1044at 1269.703 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
1,266,936 - DvMF_1042 0.13 +0.5
1,267,327 - DvMF_1042 0.67 +0.2
1,267,530 - -0.2
1,267,578 - -0.4
1,267,698 - -0.3
1,267,698 - -1.0
1,267,872 - -0.3
1,268,066 + DvMF_1043 0.25 -0.7
1,268,583 + DvMF_1043 0.84 -1.6
1,268,608 - DvMF_1043 0.87 -0.4
1,268,779 + -0.2
1,268,854 + -1.0
1,269,312 - DvMF_1044 0.62 -1.1
1,269,703 + -0.5

Or see this region's nucleotide sequence