Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gltX and DvMF_0997 are separated by 257 nucleotides DvMF_0997 and DvMF_0998 are separated by 314 nucleotides DvMF_0998 and DvMF_0999 overlap by 14 nucleotides
DvMF_0996: gltX - glutamyl-tRNA synthetase (RefSeq), at 1,210,482 to 1,211,876
gltX
DvMF_0997: DvMF_0997 - nitrogen-fixing NifU domain protein (RefSeq), at 1,212,134 to 1,212,367
_0997
DvMF_0998: DvMF_0998 - hypothetical protein (RefSeq), at 1,212,682 to 1,213,581
_0998
DvMF_0999: DvMF_0999 - MATE efflux family protein (RefSeq), at 1,213,568 to 1,214,989
_0999
Position (kb)
1212
1213
1214 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1211.960 kb on + strand at 1211.968 kb on - strand at 1212.149 kb on - strand at 1212.219 kb on + strand, within DvMF_0997 at 1212.222 kb on - strand, within DvMF_0997 at 1213.099 kb on + strand, within DvMF_0998 at 1213.387 kb on - strand, within DvMF_0998 at 1213.444 kb on - strand, within DvMF_0998 at 1213.453 kb on + strand, within DvMF_0998 at 1213.454 kb on + strand, within DvMF_0998 at 1213.462 kb on - strand, within DvMF_0998 at 1213.745 kb on + strand, within DvMF_0999 at 1214.035 kb on - strand, within DvMF_0999 at 1214.168 kb on + strand, within DvMF_0999 at 1214.355 kb on - strand, within DvMF_0999 at 1214.398 kb on - strand, within DvMF_0999 at 1214.436 kb on - strand, within DvMF_0999 at 1214.481 kb on - strand, within DvMF_0999
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,211,960 + -0.1 1,211,968 - +0.0 1,212,149 - -0.5 1,212,219 + DvMF_0997 0.36 +0.6 1,212,222 - DvMF_0997 0.38 -0.3 1,213,099 + DvMF_0998 0.46 -2.1 1,213,387 - DvMF_0998 0.78 +1.3 1,213,444 - DvMF_0998 0.85 -0.7 1,213,453 + DvMF_0998 0.86 -3.3 1,213,454 + DvMF_0998 0.86 -0.3 1,213,462 - DvMF_0998 0.87 -0.9 1,213,745 + DvMF_0999 0.12 -0.2 1,214,035 - DvMF_0999 0.33 -0.3 1,214,168 + DvMF_0999 0.42 -0.6 1,214,355 - DvMF_0999 0.55 -0.1 1,214,398 - DvMF_0999 0.58 -0.2 1,214,436 - DvMF_0999 0.61 +0.2 1,214,481 - DvMF_0999 0.64 -0.3
Or see this region's nucleotide sequence