Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0989

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0988 and DvMF_0989 are separated by 224 nucleotidesDvMF_0989 and DvMF_0990 are separated by 292 nucleotides DvMF_0988: DvMF_0988 - hydroxylamine reductase (RefSeq), at 1,200,225 to 1,201,844 _0988 DvMF_0989: DvMF_0989 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,202,069 to 1,202,950 _0989 DvMF_0990: DvMF_0990 - iron-containing alcohol dehydrogenase (RefSeq), at 1,203,243 to 1,204,403 _0990 Position (kb) 1202 1203Strain fitness (log2 ratio) -1 0 1at 1201.365 kb on + strand, within DvMF_0988at 1201.370 kb on + strand, within DvMF_0988at 1201.433 kb on + strand, within DvMF_0988at 1201.441 kb on - strand, within DvMF_0988at 1201.521 kb on - strand, within DvMF_0988at 1201.565 kb on + strand, within DvMF_0988at 1202.068 kb on + strandat 1202.076 kb on - strandat 1202.140 kb on - strandat 1202.176 kb on + strand, within DvMF_0989at 1202.176 kb on + strand, within DvMF_0989at 1202.260 kb on + strand, within DvMF_0989at 1202.356 kb on + strand, within DvMF_0989at 1202.361 kb on + strand, within DvMF_0989at 1202.548 kb on - strand, within DvMF_0989at 1202.551 kb on - strand, within DvMF_0989at 1202.707 kb on + strand, within DvMF_0989at 1202.707 kb on + strand, within DvMF_0989at 1203.077 kb on - strandat 1203.085 kb on - strandat 1203.152 kb on + strandat 1203.258 kb on - strandat 1203.512 kb on + strand, within DvMF_0990at 1203.554 kb on - strand, within DvMF_0990at 1203.554 kb on - strand, within DvMF_0990at 1203.554 kb on - strand, within DvMF_0990at 1203.556 kb on + strand, within DvMF_0990at 1203.556 kb on + strand, within DvMF_0990at 1203.596 kb on + strand, within DvMF_0990at 1203.626 kb on + strand, within DvMF_0990at 1203.634 kb on - strand, within DvMF_0990at 1203.851 kb on + strand, within DvMF_0990at 1203.852 kb on + strand, within DvMF_0990

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,201,365 + DvMF_0988 0.70 -0.3
1,201,370 + DvMF_0988 0.71 -0.4
1,201,433 + DvMF_0988 0.75 -0.4
1,201,441 - DvMF_0988 0.75 -0.4
1,201,521 - DvMF_0988 0.80 -0.2
1,201,565 + DvMF_0988 0.83 -0.4
1,202,068 + -0.1
1,202,076 - -0.3
1,202,140 - -0.6
1,202,176 + DvMF_0989 0.12 -0.6
1,202,176 + DvMF_0989 0.12 -0.8
1,202,260 + DvMF_0989 0.22 -1.0
1,202,356 + DvMF_0989 0.33 -0.6
1,202,361 + DvMF_0989 0.33 -0.4
1,202,548 - DvMF_0989 0.54 -0.6
1,202,551 - DvMF_0989 0.55 -1.1
1,202,707 + DvMF_0989 0.72 -0.6
1,202,707 + DvMF_0989 0.72 -0.7
1,203,077 - +0.1
1,203,085 - -0.3
1,203,152 + -0.7
1,203,258 - -0.4
1,203,512 + DvMF_0990 0.23 -0.6
1,203,554 - DvMF_0990 0.27 -0.3
1,203,554 - DvMF_0990 0.27 -0.3
1,203,554 - DvMF_0990 0.27 -0.4
1,203,556 + DvMF_0990 0.27 +0.2
1,203,556 + DvMF_0990 0.27 -0.4
1,203,596 + DvMF_0990 0.30 -0.2
1,203,626 + DvMF_0990 0.33 -0.1
1,203,634 - DvMF_0990 0.34 -0.2
1,203,851 + DvMF_0990 0.52 +0.0
1,203,852 + DvMF_0990 0.52 -0.3

Or see this region's nucleotide sequence