Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0602

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0601 and DvMF_0602 are separated by 517 nucleotidesDvMF_0602 and DvMF_0603 are separated by 4 nucleotides DvMF_0601: DvMF_0601 - hypothetical protein (RefSeq), at 714,475 to 714,708 _0601 DvMF_0602: DvMF_0602 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 715,226 to 715,552 _0602 DvMF_0603: DvMF_0603 - 2-oxoglutarate ferredoxin oxidoreductase subunit alpha (RefSeq), at 715,557 to 716,705 _0603 Position (kb) 715 716Strain fitness (log2 ratio) -1 0 1at 714.594 kb on + strand, within DvMF_0601at 714.602 kb on - strand, within DvMF_0601at 714.888 kb on + strandat 715.034 kb on + strandat 715.309 kb on - strand, within DvMF_0602at 715.401 kb on + strand, within DvMF_0602at 715.404 kb on - strand, within DvMF_0602at 715.541 kb on + strandat 715.985 kb on + strand, within DvMF_0603at 716.127 kb on - strand, within DvMF_0603

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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714,594 + DvMF_0601 0.51 +0.1
714,602 - DvMF_0601 0.54 -0.4
714,888 + -0.4
715,034 + +0.4
715,309 - DvMF_0602 0.25 -0.9
715,401 + DvMF_0602 0.54 -0.8
715,404 - DvMF_0602 0.54 -0.8
715,541 + -0.4
715,985 + DvMF_0603 0.37 -0.2
716,127 - DvMF_0603 0.50 -0.2

Or see this region's nucleotide sequence