Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0412

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0411 and DvMF_0412 are separated by 217 nucleotidesDvMF_0412 and DvMF_0413 are separated by 544 nucleotides DvMF_0411: DvMF_0411 - SNARE associated Golgi protein (RefSeq), at 480,455 to 481,042 _0411 DvMF_0412: DvMF_0412 - protein-L-isoaspartate O-methyltransferase (RefSeq), at 481,260 to 481,907 _0412 DvMF_0413: DvMF_0413 - putative signal transduction protein with CBS domains (RefSeq), at 482,452 to 482,880 _0413 Position (kb) 481 482Strain fitness (log2 ratio) -1 0 1at 480.598 kb on + strand, within DvMF_0411at 480.606 kb on - strand, within DvMF_0411at 480.668 kb on + strand, within DvMF_0411at 480.804 kb on + strand, within DvMF_0411at 481.039 kb on - strandat 481.055 kb on + strandat 481.299 kb on + strandat 481.591 kb on + strand, within DvMF_0412at 481.731 kb on - strand, within DvMF_0412at 481.736 kb on - strand, within DvMF_0412at 481.742 kb on - strand, within DvMF_0412at 481.762 kb on + strand, within DvMF_0412at 482.085 kb on - strandat 482.122 kb on - strandat 482.669 kb on - strand, within DvMF_0413at 482.797 kb on + strand, within DvMF_0413at 482.864 kb on - strandat 482.874 kb on + strandat 482.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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480,598 + DvMF_0411 0.24 +0.6
480,606 - DvMF_0411 0.26 -0.4
480,668 + DvMF_0411 0.36 +0.3
480,804 + DvMF_0411 0.59 -0.3
481,039 - -0.9
481,055 + -0.4
481,299 + -0.3
481,591 + DvMF_0412 0.51 -1.0
481,731 - DvMF_0412 0.73 -0.9
481,736 - DvMF_0412 0.73 -0.7
481,742 - DvMF_0412 0.74 -0.7
481,762 + DvMF_0412 0.77 -1.0
482,085 - -0.0
482,122 - -0.4
482,669 - DvMF_0413 0.51 +0.7
482,797 + DvMF_0413 0.80 +0.3
482,864 - +0.4
482,874 + -0.3
482,904 - -0.2

Or see this region's nucleotide sequence