Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0272 and DvMF_0273 are separated by 361 nucleotides DvMF_0273 and DvMF_0274 are separated by 29 nucleotides
DvMF_0272: DvMF_0272 - hydrogenase maturation protease (RefSeq), at 311,118 to 311,597
_0272
DvMF_0273: DvMF_0273 - nickel-dependent hydrogenase large subunit (RefSeq), at 311,959 to 313,425
_0273
DvMF_0274: DvMF_0274 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 313,455 to 314,408
_0274
Position (kb) 311
312
313
314 Strain fitness (log2 ratio) -2
-1
0
1 at 311.455 kb on - strand, within DvMF_0272 at 311.486 kb on + strand, within DvMF_0272 at 311.569 kb on - strand at 311.877 kb on - strand at 312.399 kb on - strand, within DvMF_0273 at 312.540 kb on + strand, within DvMF_0273 at 312.871 kb on - strand, within DvMF_0273 at 312.924 kb on + strand, within DvMF_0273 at 312.924 kb on + strand, within DvMF_0273 at 312.932 kb on - strand, within DvMF_0273 at 312.939 kb on + strand, within DvMF_0273 at 313.199 kb on + strand, within DvMF_0273 at 313.339 kb on + strand at 313.402 kb on + strand at 313.661 kb on + strand, within DvMF_0274 at 313.705 kb on - strand, within DvMF_0274 at 314.038 kb on + strand, within DvMF_0274 at 314.098 kb on + strand, within DvMF_0274 at 314.106 kb on - strand, within DvMF_0274 at 314.256 kb on + strand, within DvMF_0274 at 314.256 kb on + strand, within DvMF_0274
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 311,455 - DvMF_0272 0.70 -1.4 311,486 + DvMF_0272 0.77 -2.0 311,569 - -1.1 311,877 - -0.8 312,399 - DvMF_0273 0.30 -0.8 312,540 + DvMF_0273 0.40 -0.9 312,871 - DvMF_0273 0.62 -0.5 312,924 + DvMF_0273 0.66 -0.7 312,924 + DvMF_0273 0.66 -1.3 312,932 - DvMF_0273 0.66 -0.5 312,939 + DvMF_0273 0.67 -1.1 313,199 + DvMF_0273 0.85 -1.1 313,339 + -0.6 313,402 + +0.7 313,661 + DvMF_0274 0.22 -1.0 313,705 - DvMF_0274 0.26 -0.9 314,038 + DvMF_0274 0.61 -0.2 314,098 + DvMF_0274 0.67 -0.8 314,106 - DvMF_0274 0.68 +0.0 314,256 + DvMF_0274 0.84 -0.5 314,256 + DvMF_0274 0.84 -0.8
Or see this region's nucleotide sequence