Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0272

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0271 and DvMF_0272 are separated by 584 nucleotidesDvMF_0272 and DvMF_0273 are separated by 361 nucleotides DvMF_0271: DvMF_0271 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 309,580 to 310,533 _0271 DvMF_0272: DvMF_0272 - hydrogenase maturation protease (RefSeq), at 311,118 to 311,597 _0272 DvMF_0273: DvMF_0273 - nickel-dependent hydrogenase large subunit (RefSeq), at 311,959 to 313,425 _0273 Position (kb) 311 312Strain fitness (log2 ratio) -2 -1 0 1at 310.489 kb on + strandat 310.561 kb on - strandat 310.599 kb on - strandat 310.635 kb on + strandat 311.455 kb on - strand, within DvMF_0272at 311.486 kb on + strand, within DvMF_0272at 311.569 kb on - strandat 311.877 kb on - strandat 312.399 kb on - strand, within DvMF_0273at 312.540 kb on + strand, within DvMF_0273

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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310,489 + +0.0
310,561 - -0.4
310,599 - -0.4
310,635 + +0.2
311,455 - DvMF_0272 0.70 -1.4
311,486 + DvMF_0272 0.77 -2.0
311,569 - -1.1
311,877 - -0.8
312,399 - DvMF_0273 0.30 -0.8
312,540 + DvMF_0273 0.40 -0.9

Or see this region's nucleotide sequence