Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0207

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0206 and DvMF_0207 are separated by 240 nucleotidesDvMF_0207 and DvMF_0208 are separated by 274 nucleotides DvMF_0206: DvMF_0206 - hypothetical protein (RefSeq), at 224,325 to 225,326 _0206 DvMF_0207: DvMF_0207 - thiamine biosynthesis protein ThiC (RefSeq), at 225,567 to 226,856 _0207 DvMF_0208: DvMF_0208 - EAL domain protein (RefSeq), at 227,131 to 229,419 _0208 Position (kb) 225 226 227Strain fitness (log2 ratio) -1 0 1at 225.039 kb on + strand, within DvMF_0206at 225.291 kb on - strandat 225.333 kb on + strandat 225.842 kb on + strand, within DvMF_0207at 226.046 kb on + strand, within DvMF_0207at 226.330 kb on + strand, within DvMF_0207at 226.340 kb on + strand, within DvMF_0207at 226.355 kb on + strand, within DvMF_0207at 226.578 kb on - strand, within DvMF_0207at 226.720 kb on + strand, within DvMF_0207at 226.851 kb on + strandat 226.880 kb on - strandat 227.061 kb on + strandat 227.297 kb on - strandat 227.306 kb on - strandat 227.364 kb on - strand, within DvMF_0208at 227.463 kb on - strand, within DvMF_0208at 227.555 kb on - strand, within DvMF_0208at 227.660 kb on + strand, within DvMF_0208

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
225,039 + DvMF_0206 0.71 +0.9
225,291 - -0.1
225,333 + -1.0
225,842 + DvMF_0207 0.21 -0.4
226,046 + DvMF_0207 0.37 -0.9
226,330 + DvMF_0207 0.59 -0.8
226,340 + DvMF_0207 0.60 -1.1
226,355 + DvMF_0207 0.61 -0.8
226,578 - DvMF_0207 0.78 -0.7
226,720 + DvMF_0207 0.89 -0.3
226,851 + -0.7
226,880 - -0.5
227,061 + -0.6
227,297 - -0.4
227,306 - +0.0
227,364 - DvMF_0208 0.10 +0.2
227,463 - DvMF_0208 0.15 -0.2
227,555 - DvMF_0208 0.19 -0.5
227,660 + DvMF_0208 0.23 -0.4

Or see this region's nucleotide sequence