Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0003 and DvMF_0004 are separated by 298 nucleotides DvMF_0004 and DvMF_0005 are separated by 92 nucleotides
DvMF_0003: DvMF_0003 - AMP-dependent synthetase and ligase (RefSeq), at 2,583 to 4,256
_0003
DvMF_0004: DvMF_0004 - protein of unknown function DUF181 (RefSeq), at 4,555 to 6,309
_0004
DvMF_0005: DvMF_0005 - methyltransferase small (RefSeq), at 6,402 to 7,196
_0005
Position (kb) 4
5
6
7 Strain fitness (log2 ratio) -1
0
1 at 3.776 kb on + strand, within DvMF_0003 at 3.777 kb on + strand, within DvMF_0003 at 3.811 kb on + strand, within DvMF_0003 at 4.097 kb on + strand at 4.115 kb on - strand at 4.481 kb on - strand at 4.599 kb on + strand at 4.846 kb on - strand, within DvMF_0004 at 4.864 kb on - strand, within DvMF_0004 at 4.869 kb on - strand, within DvMF_0004 at 4.966 kb on + strand, within DvMF_0004 at 5.005 kb on - strand, within DvMF_0004 at 5.035 kb on - strand, within DvMF_0004 at 5.054 kb on - strand, within DvMF_0004 at 5.054 kb on - strand, within DvMF_0004 at 5.054 kb on - strand, within DvMF_0004 at 5.054 kb on - strand, within DvMF_0004 at 5.214 kb on + strand, within DvMF_0004 at 5.216 kb on + strand, within DvMF_0004 at 5.216 kb on + strand, within DvMF_0004 at 5.224 kb on - strand, within DvMF_0004 at 5.312 kb on + strand, within DvMF_0004 at 5.557 kb on + strand, within DvMF_0004 at 5.601 kb on - strand, within DvMF_0004 at 5.694 kb on - strand, within DvMF_0004 at 5.868 kb on + strand, within DvMF_0004 at 5.868 kb on + strand, within DvMF_0004 at 6.163 kb on + strand at 6.588 kb on - strand, within DvMF_0005 at 6.739 kb on - strand, within DvMF_0005 at 6.739 kb on - strand, within DvMF_0005 at 6.763 kb on + strand, within DvMF_0005 at 6.831 kb on - strand, within DvMF_0005 at 6.937 kb on + strand, within DvMF_0005 at 6.994 kb on + strand, within DvMF_0005 at 7.210 kb on - strand at 7.295 kb on + strand at 7.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 3,776 + DvMF_0003 0.71 -0.5 3,777 + DvMF_0003 0.71 -0.4 3,811 + DvMF_0003 0.73 -0.9 4,097 + +0.8 4,115 - -0.7 4,481 - -0.4 4,599 + -0.3 4,846 - DvMF_0004 0.17 -0.0 4,864 - DvMF_0004 0.18 -0.8 4,869 - DvMF_0004 0.18 -1.3 4,966 + DvMF_0004 0.23 -1.1 5,005 - DvMF_0004 0.26 -0.6 5,035 - DvMF_0004 0.27 -0.8 5,054 - DvMF_0004 0.28 -0.6 5,054 - DvMF_0004 0.28 -1.3 5,054 - DvMF_0004 0.28 -1.0 5,054 - DvMF_0004 0.28 -0.6 5,214 + DvMF_0004 0.38 -0.7 5,216 + DvMF_0004 0.38 -0.3 5,216 + DvMF_0004 0.38 -0.9 5,224 - DvMF_0004 0.38 -1.1 5,312 + DvMF_0004 0.43 -0.8 5,557 + DvMF_0004 0.57 -0.8 5,601 - DvMF_0004 0.60 -0.7 5,694 - DvMF_0004 0.65 -0.7 5,868 + DvMF_0004 0.75 -0.9 5,868 + DvMF_0004 0.75 -0.9 6,163 + -0.7 6,588 - DvMF_0005 0.23 -0.2 6,739 - DvMF_0005 0.42 -0.1 6,739 - DvMF_0005 0.42 -0.4 6,763 + DvMF_0005 0.45 -0.9 6,831 - DvMF_0005 0.54 -0.4 6,937 + DvMF_0005 0.67 -0.9 6,994 + DvMF_0005 0.74 -0.5 7,210 - -0.3 7,295 + -0.3 7,295 + -0.2
Or see this region's nucleotide sequence