Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4126 and Shewana3_4127 are separated by 203 nucleotides Shewana3_4127 and Shewana3_4128 are separated by 259 nucleotides
Shewana3_4126: Shewana3_4126 - DeoR family transcriptional regulator (RefSeq), at 4,958,460 to 4,959,230
_4126
Shewana3_4127: Shewana3_4127 - TonB-dependent siderophore receptor (RefSeq), at 4,959,434 to 4,961,542
_4127
Shewana3_4128: Shewana3_4128 - glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase (RefSeq), at 4,961,802 to 4,963,166
_4128
Position (kb)
4959
4960
4961
4962 Strain fitness (log2 ratio)
-2
-1
0
1 at 4958.518 kb on - strand at 4958.576 kb on - strand, within Shewana3_4126 at 4958.753 kb on - strand, within Shewana3_4126 at 4958.821 kb on - strand, within Shewana3_4126 at 4958.872 kb on - strand, within Shewana3_4126 at 4958.879 kb on - strand, within Shewana3_4126 at 4959.125 kb on - strand, within Shewana3_4126 at 4959.160 kb on - strand at 4959.587 kb on - strand at 4959.635 kb on - strand at 4959.721 kb on - strand, within Shewana3_4127 at 4960.017 kb on - strand, within Shewana3_4127 at 4960.112 kb on + strand, within Shewana3_4127 at 4960.314 kb on - strand, within Shewana3_4127 at 4960.377 kb on - strand, within Shewana3_4127 at 4960.539 kb on - strand, within Shewana3_4127 at 4960.622 kb on - strand, within Shewana3_4127 at 4960.624 kb on + strand, within Shewana3_4127 at 4960.719 kb on + strand, within Shewana3_4127 at 4960.750 kb on - strand, within Shewana3_4127 at 4960.789 kb on + strand, within Shewana3_4127 at 4960.884 kb on - strand, within Shewana3_4127 at 4961.141 kb on + strand, within Shewana3_4127 at 4961.152 kb on + strand, within Shewana3_4127 at 4961.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,958,518 - -0.6 4,958,576 - Shewana3_4126 0.15 +0.1 4,958,753 - Shewana3_4126 0.38 +0.9 4,958,821 - Shewana3_4126 0.47 +1.3 4,958,872 - Shewana3_4126 0.53 +0.6 4,958,879 - Shewana3_4126 0.54 +0.4 4,959,125 - Shewana3_4126 0.86 +0.4 4,959,160 - +0.9 4,959,587 - +0.2 4,959,635 - +0.7 4,959,721 - Shewana3_4127 0.14 +0.3 4,960,017 - Shewana3_4127 0.28 +0.8 4,960,112 + Shewana3_4127 0.32 -1.9 4,960,314 - Shewana3_4127 0.42 +0.1 4,960,377 - Shewana3_4127 0.45 -0.6 4,960,539 - Shewana3_4127 0.52 -0.6 4,960,622 - Shewana3_4127 0.56 -0.0 4,960,624 + Shewana3_4127 0.56 -1.2 4,960,719 + Shewana3_4127 0.61 -0.9 4,960,750 - Shewana3_4127 0.62 -0.3 4,960,789 + Shewana3_4127 0.64 -1.8 4,960,884 - Shewana3_4127 0.69 -0.4 4,961,141 + Shewana3_4127 0.81 -0.1 4,961,152 + Shewana3_4127 0.81 +0.2 4,961,512 - +0.3
Or see this region's nucleotide sequence