Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4111 and Shewana3_4112 are separated by 108 nucleotides Shewana3_4112 and Shewana3_4113 are separated by 421 nucleotides Shewana3_4113 and Shewana3_4114 are separated by 82 nucleotides Shewana3_4114 and Shewana3_4115 are separated by 68 nucleotides
Shewana3_4111: Shewana3_4111 - cytochrome c, class I (RefSeq), at 4,935,890 to 4,936,513
_4111
Shewana3_4112: Shewana3_4112 - hypothetical protein (RefSeq), at 4,936,622 to 4,936,915
_4112
Shewana3_4113: Shewana3_4113 - hypothetical protein (RefSeq), at 4,937,337 to 4,937,975
_4113
Shewana3_4114: Shewana3_4114 - hypothetical protein (RefSeq), at 4,938,058 to 4,938,612
_4114
Shewana3_4115: Shewana3_4115 - hypothetical protein (RefSeq), at 4,938,681 to 4,939,148
_4115
Position (kb) 4937
4938 Strain fitness (log2 ratio) -1
0
1 at 4936.568 kb on + strand at 4936.637 kb on - strand at 4937.038 kb on + strand at 4937.256 kb on - strand at 4937.299 kb on - strand at 4937.352 kb on - strand at 4937.439 kb on - strand, within Shewana3_4113 at 4937.644 kb on + strand, within Shewana3_4113 at 4937.652 kb on - strand, within Shewana3_4113 at 4937.744 kb on + strand, within Shewana3_4113 at 4937.901 kb on - strand, within Shewana3_4113 at 4938.010 kb on - strand at 4938.237 kb on + strand, within Shewana3_4114 at 4938.699 kb on - strand at 4938.760 kb on - strand, within Shewana3_4115
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,936,568 + -1.2 4,936,637 - +0.2 4,937,038 + +0.1 4,937,256 - +0.6 4,937,299 - +0.9 4,937,352 - +0.4 4,937,439 - Shewana3_4113 0.16 +0.3 4,937,644 + Shewana3_4113 0.48 -0.5 4,937,652 - Shewana3_4113 0.49 +0.6 4,937,744 + Shewana3_4113 0.64 -0.3 4,937,901 - Shewana3_4113 0.88 +0.4 4,938,010 - +0.4 4,938,237 + Shewana3_4114 0.32 +1.7 4,938,699 - +0.3 4,938,760 - Shewana3_4115 0.17 +0.1
Or see this region's nucleotide sequence