Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt engB and Shewana3_4111 are separated by 169 nucleotides Shewana3_4111 and Shewana3_4112 are separated by 108 nucleotides Shewana3_4112 and Shewana3_4113 are separated by 421 nucleotides
Shewana3_4110: engB - ribosome biogenesis GTP-binding protein YsxC (RefSeq), at 4,935,061 to 4,935,720
engB
Shewana3_4111: Shewana3_4111 - cytochrome c, class I (RefSeq), at 4,935,890 to 4,936,513
_4111
Shewana3_4112: Shewana3_4112 - hypothetical protein (RefSeq), at 4,936,622 to 4,936,915
_4112
Shewana3_4113: Shewana3_4113 - hypothetical protein (RefSeq), at 4,937,337 to 4,937,975
_4113
Position (kb) 4935
4936
4937 Strain fitness (log2 ratio) -1
0
1 at 4935.108 kb on + strand at 4935.108 kb on - strand at 4935.805 kb on - strand at 4935.844 kb on + strand at 4935.853 kb on + strand at 4935.858 kb on + strand at 4935.942 kb on - strand at 4936.568 kb on + strand at 4936.637 kb on - strand at 4937.038 kb on + strand at 4937.256 kb on - strand at 4937.299 kb on - strand at 4937.352 kb on - strand at 4937.439 kb on - strand, within Shewana3_4113
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,935,108 + -0.6 4,935,108 - +0.8 4,935,805 - -0.8 4,935,844 + -0.3 4,935,853 + -1.2 4,935,858 + -0.2 4,935,942 - -0.8 4,936,568 + -1.2 4,936,637 - +0.2 4,937,038 + +0.1 4,937,256 - +0.6 4,937,299 - +0.9 4,937,352 - +0.4 4,937,439 - Shewana3_4113 0.16 +0.3
Or see this region's nucleotide sequence