Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4013 and Shewana3_4014 are separated by 129 nucleotides Shewana3_4014 and Shewana3_4015 are separated by 58 nucleotides
Shewana3_4013: Shewana3_4013 - RNA-binding S1 domain-containing protein (RefSeq), at 4,817,460 to 4,819,799
_4013
Shewana3_4014: Shewana3_4014 - transcription elongation factor GreB (RefSeq), at 4,819,929 to 4,820,432
_4014
Shewana3_4015: Shewana3_4015 - response regulator receiver modulated diguanylate cyclase (RefSeq), at 4,820,491 to 4,821,438
_4015
Position (kb)
4819
4820
4821 Strain fitness (log2 ratio)
-1
0
1 at 4818.987 kb on - strand, within Shewana3_4013 at 4818.987 kb on - strand, within Shewana3_4013 at 4818.989 kb on - strand, within Shewana3_4013 at 4818.992 kb on + strand, within Shewana3_4013 at 4819.000 kb on - strand, within Shewana3_4013 at 4819.056 kb on + strand, within Shewana3_4013 at 4819.056 kb on + strand, within Shewana3_4013 at 4819.064 kb on - strand, within Shewana3_4013 at 4819.235 kb on + strand, within Shewana3_4013 at 4819.253 kb on - strand, within Shewana3_4013 at 4819.488 kb on - strand, within Shewana3_4013 at 4819.621 kb on - strand at 4819.632 kb on + strand at 4819.658 kb on + strand at 4819.679 kb on + strand at 4819.706 kb on + strand at 4819.928 kb on - strand at 4820.024 kb on + strand, within Shewana3_4014 at 4820.054 kb on - strand, within Shewana3_4014 at 4820.583 kb on + strand at 4820.693 kb on + strand, within Shewana3_4015 at 4820.725 kb on - strand, within Shewana3_4015 at 4820.735 kb on - strand, within Shewana3_4015 at 4821.155 kb on + strand, within Shewana3_4015 at 4821.303 kb on - strand, within Shewana3_4015
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,818,987 - Shewana3_4013 0.65 -0.2 4,818,987 - Shewana3_4013 0.65 -0.7 4,818,989 - Shewana3_4013 0.65 +0.0 4,818,992 + Shewana3_4013 0.65 -0.8 4,819,000 - Shewana3_4013 0.66 -0.4 4,819,056 + Shewana3_4013 0.68 -1.3 4,819,056 + Shewana3_4013 0.68 +0.3 4,819,064 - Shewana3_4013 0.69 -0.3 4,819,235 + Shewana3_4013 0.76 -1.4 4,819,253 - Shewana3_4013 0.77 -0.4 4,819,488 - Shewana3_4013 0.87 -0.9 4,819,621 - -0.6 4,819,632 + -0.2 4,819,658 + +0.4 4,819,679 + +1.3 4,819,706 + +0.8 4,819,928 - +0.7 4,820,024 + Shewana3_4014 0.19 +0.7 4,820,054 - Shewana3_4014 0.25 +0.4 4,820,583 + +0.1 4,820,693 + Shewana3_4015 0.21 +0.0 4,820,725 - Shewana3_4015 0.25 -0.7 4,820,735 - Shewana3_4015 0.26 -1.2 4,821,155 + Shewana3_4015 0.70 -0.0 4,821,303 - Shewana3_4015 0.86 -0.7
Or see this region's nucleotide sequence