Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4005

Experiment: Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0001 mg/ml
4,808,269	+		Shewana3_4004	0.51	-0.3
4,808,269	+		Shewana3_4004	0.51	-0.3
4,808,341	-		Shewana3_4004	0.55	+0.3
4,808,352	-		Shewana3_4004	0.56	+0.8
4,808,374	+		Shewana3_4004	0.57	-2.0
4,808,407	+		Shewana3_4004	0.59	-0.8
4,808,407	+		Shewana3_4004	0.59	-1.1
4,808,432	+		Shewana3_4004	0.60	+0.2
4,808,472	+		Shewana3_4004	0.63	-2.0
4,808,509	+		Shewana3_4004	0.65	-0.4
4,808,698	-		Shewana3_4004	0.76	-0.2
4,808,749	-		Shewana3_4004	0.79	+0.7
4,808,860	-		Shewana3_4004	0.85	+0.6
4,808,860	-		Shewana3_4004	0.85	+0.1
4,808,878	-		Shewana3_4004	0.86	+0.3
4,808,994	+				+0.0
4,809,010	+				-0.7
4,809,010	+				-1.3
4,809,010	+				-3.6
4,809,010	+				-0.1
4,809,010	+				-2.8
4,809,010	+				-1.5
4,809,010	+				-1.5
4,809,010	+				-2.2
4,809,010	+				-0.3
4,809,010	+				+0.2
4,809,010	+				-1.1
4,809,010	+				+0.6
4,809,018	-				+0.1
4,809,018	-				+0.5
4,809,018	-				+0.2
4,809,018	-				-0.3
4,809,018	-				+0.5
4,809,018	-				+0.4
4,809,018	-				-1.0
4,809,018	-				+0.4
4,809,018	-				-0.5
4,809,018	-				+0.0
4,809,018	-				+0.2
4,809,018	-				-1.5
4,809,018	-				+0.2
4,809,018	-				+0.3
4,809,018	-				+0.2
4,809,018	-				+0.1
4,809,018	-				+0.0
4,809,020	+				-0.9
4,809,020	+				+0.5
4,809,023	-				+0.3
4,809,023	-				-0.2
4,809,041	-				-0.5
4,809,052	+				-0.9
4,809,052	+				-1.9
4,809,052	+				-0.5
4,809,061	-				-0.1
4,809,061	-				+0.4
4,809,063	+				-0.6
4,809,063	+				-1.6
4,809,070	+				-0.1
4,809,070	+				-0.9
4,809,070	+				-1.5
4,809,071	-				+0.5
4,809,075	+				-1.1
4,809,078	-				-0.2
4,809,078	-				-0.4
4,809,086	-				-0.0
4,809,097	-				+0.1
4,809,097	-				-0.7
4,809,110	+				-2.0
4,809,110	+				-1.2
4,809,118	-				+0.8
4,809,119	+				-0.3
4,809,122	+				-0.8
4,809,130	-				-0.0
4,809,143	-				-0.7
4,809,199	+				-0.7
4,809,225	+				-1.0
4,809,225	+				-1.9
4,809,225	+				-0.7
4,809,225	+				-0.6
4,809,225	+				-2.4
4,809,233	-				+0.0
4,809,233	-				+0.4
4,809,233	-				+0.0
4,809,233	-				-0.2
4,809,233	-				+0.0
4,809,233	-				+0.4
4,809,235	-				-0.1
4,809,244	-				+0.1
4,809,249	+				-1.0
4,809,283	-				-0.3
4,809,291	-		Shewana3_4005	0.10	-0.1
4,809,291	-		Shewana3_4005	0.10	-0.4
4,809,297	-		Shewana3_4005	0.11	-0.0
4,809,297	-		Shewana3_4005	0.11	-0.2
4,809,302	-		Shewana3_4005	0.12	-0.2
4,809,304	+		Shewana3_4005	0.12	-1.0
4,809,324	-		Shewana3_4005	0.15	-0.1
4,809,357	-		Shewana3_4005	0.19	+0.1
4,809,358	-		Shewana3_4005	0.19	+0.3
4,809,359	-		Shewana3_4005	0.19	-1.1
4,809,384	+		Shewana3_4005	0.22	+0.8
4,809,384	+		Shewana3_4005	0.22	-3.8
4,809,384	+		Shewana3_4005	0.22	-0.2
4,809,384	+		Shewana3_4005	0.22	-0.5
4,809,384	+		Shewana3_4005	0.22	-0.2
4,809,384	+		Shewana3_4005	0.22	-1.4
4,809,384	+		Shewana3_4005	0.22	-0.3
4,809,392	-		Shewana3_4005	0.24	-0.1
4,809,392	-		Shewana3_4005	0.24	-0.4
4,809,392	-		Shewana3_4005	0.24	-0.3
4,809,392	-		Shewana3_4005	0.24	-0.8
4,809,392	-		Shewana3_4005	0.24	-1.2
4,809,392	-		Shewana3_4005	0.24	+0.5
4,809,392	-		Shewana3_4005	0.24	-0.6
4,809,392	-		Shewana3_4005	0.24	-0.7
4,809,392	-		Shewana3_4005	0.24	-0.1
4,809,398	+		Shewana3_4005	0.24	-2.7
4,809,398	+		Shewana3_4005	0.24	-2.7
4,809,407	-		Shewana3_4005	0.25	-0.2
4,809,416	-		Shewana3_4005	0.27	+0.1
4,809,426	-		Shewana3_4005	0.28	-0.3
4,809,430	+		Shewana3_4005	0.28	-2.0
4,809,430	+		Shewana3_4005	0.28	+0.3
4,809,430	+		Shewana3_4005	0.28	-1.3
4,809,430	+		Shewana3_4005	0.28	+0.3
4,809,437	+		Shewana3_4005	0.29	-2.2
4,809,438	-		Shewana3_4005	0.30	-0.2
4,809,438	-		Shewana3_4005	0.30	-0.2
4,809,438	-		Shewana3_4005	0.30	+0.0
4,809,438	-		Shewana3_4005	0.30	-0.2
4,809,438	-		Shewana3_4005	0.30	-0.4
4,809,438	-		Shewana3_4005	0.30	-0.6
4,809,438	-		Shewana3_4005	0.30	+0.5
4,809,438	-		Shewana3_4005	0.30	-0.7
4,809,453	-		Shewana3_4005	0.32	+0.0
4,809,460	-		Shewana3_4005	0.32	-0.5
4,809,475	-		Shewana3_4005	0.34	-0.9
4,809,477	-		Shewana3_4005	0.35	-0.0
4,809,530	+		Shewana3_4005	0.42	-2.0
4,809,530	+		Shewana3_4005	0.42	-0.7
4,809,537	-		Shewana3_4005	0.42	-0.4
4,809,537	-		Shewana3_4005	0.42	-0.1
4,809,538	-		Shewana3_4005	0.43	-0.5
4,809,538	-		Shewana3_4005	0.43	-0.7
4,809,539	-		Shewana3_4005	0.43	+0.3
4,809,586	+		Shewana3_4005	0.49	+0.8
4,809,586	+		Shewana3_4005	0.49	+1.8
4,809,594	-		Shewana3_4005	0.50	-0.3
4,809,594	-		Shewana3_4005	0.50	+0.5
4,809,597	+		Shewana3_4005	0.50	-1.7
4,809,619	+		Shewana3_4005	0.53	-2.0
4,809,627	-		Shewana3_4005	0.54	+0.7
4,809,628	-		Shewana3_4005	0.54	-0.9
4,809,628	-		Shewana3_4005	0.54	-0.7
4,809,649	-		Shewana3_4005	0.57	-0.9
4,809,740	+				+1.8
4,809,745	+		Shewana3_4005	0.70	-1.0
4,809,745	+		Shewana3_4005	0.70	-1.7
4,809,745	+		Shewana3_4005	0.70	-3.1
4,809,745	+		Shewana3_4005	0.70	-1.2
4,809,753	-		Shewana3_4005	0.71	-1.3
4,809,788	-		Shewana3_4005	0.75	+0.8
4,809,809	+		Shewana3_4005	0.78	-0.2
4,809,838	+		Shewana3_4005	0.82	-3.1
4,809,838	+		Shewana3_4005	0.82	-1.1
4,809,838	+		Shewana3_4005	0.82	-0.3
4,809,840	+		Shewana3_4005	0.82	+0.0
4,809,844	+		Shewana3_4005	0.83	+0.8
4,809,845	+		Shewana3_4005	0.83	-0.7
4,809,846	-		Shewana3_4005	0.83	-0.9
4,809,853	+		Shewana3_4005	0.84	-0.5
4,809,853	-		Shewana3_4005	0.84	-0.0
4,809,853	-		Shewana3_4005	0.84	-0.0
4,809,858	+		Shewana3_4005	0.84	-1.7
4,809,858	+		Shewana3_4005	0.84	+0.8
4,809,858	+		Shewana3_4005	0.84	-1.0
4,809,858	+		Shewana3_4005	0.84	-1.1
4,809,867	+		Shewana3_4005	0.86	-1.3
4,809,867	+		Shewana3_4005	0.86	-0.2
4,809,904	-				-2.3
4,809,905	-				-0.7
4,809,905	-				-1.0
4,809,924	-				+0.3
4,809,925	-				-1.9
4,809,929	+				-0.3
4,809,934	+				-0.3
4,809,934	+				-2.3
4,809,939	+				-1.0
4,809,939	+				-1.1
4,809,939	+				-1.3
4,809,939	+				-1.9
4,809,939	+				-1.0
4,809,942	-				-0.2
4,809,947	-				-0.8
4,809,947	-				-0.6
4,809,958	+				-1.9
4,809,965	-				-1.9
4,809,971	+				-2.3
4,809,974	+				-0.7
4,809,989	+				-1.2
4,809,991	-				-0.1
4,809,997	-				+0.7
4,810,002	+				-0.6
4,810,017	-				+0.5
4,810,038	-				-1.0
4,810,084	+				-1.2
4,810,115	+				-1.7
4,810,131	+				-1.5
4,810,132	+				+1.8
4,810,140	-				-1.6
4,810,162	+				+0.4
4,810,254	+				-1.5
4,810,254	+				+0.8
4,810,260	+				-0.6
4,810,276	+				-1.7
4,810,288	-				-1.5
4,810,291	+		Shewana3_4006	0.10	-2.4
4,810,299	-		Shewana3_4006	0.11	-1.4
4,810,299	-		Shewana3_4006	0.11	-1.7
4,810,299	-		Shewana3_4006	0.11	-2.5
4,810,299	-		Shewana3_4006	0.11	-0.9
4,810,299	-		Shewana3_4006	0.11	-0.6
4,810,299	-		Shewana3_4006	0.11	-0.4
4,810,315	-		Shewana3_4006	0.12	-0.3
4,810,322	+		Shewana3_4006	0.13	-0.3
4,810,323	-		Shewana3_4006	0.13	-0.4
4,810,323	-		Shewana3_4006	0.13	-2.1
4,810,331	-		Shewana3_4006	0.13	-1.5
4,810,340	+		Shewana3_4006	0.14	-1.9
4,810,348	-		Shewana3_4006	0.15	-1.0
4,810,350	+		Shewana3_4006	0.15	-2.2
4,810,353	-		Shewana3_4006	0.15	-1.1
4,810,355	+		Shewana3_4006	0.15	-2.0
4,810,358	-		Shewana3_4006	0.16	-0.5
4,810,363	-		Shewana3_4006	0.16	-2.2
4,810,404	+		Shewana3_4006	0.19	-0.7
4,810,412	-		Shewana3_4006	0.20	-1.6
4,810,422	+		Shewana3_4006	0.21	-1.6
4,810,422	+		Shewana3_4006	0.21	-1.0
4,810,430	-		Shewana3_4006	0.21	-1.7
4,810,442	+		Shewana3_4006	0.22	-1.8
4,810,451	+		Shewana3_4006	0.23	-0.6
4,810,470	+		Shewana3_4006	0.25	-0.1
4,810,470	+		Shewana3_4006	0.25	-1.0
4,810,489	-		Shewana3_4006	0.26	+0.5
4,810,541	+		Shewana3_4006	0.30	+0.1
4,810,549	-		Shewana3_4006	0.31	-0.4
4,810,557	+		Shewana3_4006	0.32	+1.4
4,810,572	-		Shewana3_4006	0.33	-0.1
4,810,620	+		Shewana3_4006	0.37	-3.0
4,810,620	+		Shewana3_4006	0.37	+0.0
4,810,620	+		Shewana3_4006	0.37	-1.2
4,810,826	+		Shewana3_4006	0.53	-1.0
4,810,834	-		Shewana3_4006	0.54	-0.4
4,810,834	-		Shewana3_4006	0.54	-1.2
4,810,870	+		Shewana3_4006	0.57	-1.3
4,810,904	+		Shewana3_4006	0.60	-0.8
4,810,913	-		Shewana3_4006	0.60	-2.6