Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3958 and Shewana3_3959 are separated by 182 nucleotides Shewana3_3959 and Shewana3_3960 are separated by 270 nucleotides Shewana3_3960 and Shewana3_3961 overlap by 4 nucleotides Shewana3_3961 and Shewana3_3962 are separated by 4 nucleotides
Shewana3_3958: Shewana3_3958 - inner membrane protein YjeH (RefSeq), at 4,756,739 to 4,758,007
_3958
Shewana3_3959: Shewana3_3959 - AsnC family transcriptional regulator (RefSeq), at 4,758,190 to 4,758,666
_3959
Shewana3_3960: Shewana3_3960 - polysulphide reductase, NrfD (RefSeq), at 4,758,937 to 4,759,878
_3960
Shewana3_3961: Shewana3_3961 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 4,759,875 to 4,760,561
_3961
Shewana3_3962: Shewana3_3962 - formate-dependent nitrite reductase (RefSeq), at 4,760,566 to 4,761,030
_3962
Position (kb) 4758
4759
4760 Strain fitness (log2 ratio) -2
-1
0
1 at 4757.940 kb on - strand at 4757.940 kb on - strand at 4757.965 kb on - strand at 4757.988 kb on + strand at 4757.988 kb on - strand at 4758.034 kb on + strand at 4758.059 kb on + strand at 4758.312 kb on + strand, within Shewana3_3959 at 4758.712 kb on - strand at 4758.819 kb on + strand at 4758.819 kb on + strand at 4758.819 kb on + strand at 4758.862 kb on + strand at 4758.870 kb on - strand at 4758.888 kb on - strand at 4758.910 kb on + strand at 4758.934 kb on - strand at 4759.157 kb on + strand, within Shewana3_3960 at 4759.234 kb on + strand, within Shewana3_3960 at 4759.285 kb on + strand, within Shewana3_3960 at 4759.374 kb on + strand, within Shewana3_3960 at 4759.497 kb on + strand, within Shewana3_3960 at 4759.543 kb on + strand, within Shewana3_3960 at 4759.630 kb on + strand, within Shewana3_3960 at 4759.666 kb on + strand, within Shewana3_3960 at 4759.733 kb on + strand, within Shewana3_3960 at 4759.897 kb on - strand at 4759.940 kb on + strand at 4759.947 kb on - strand, within Shewana3_3961 at 4759.948 kb on - strand, within Shewana3_3961 at 4759.958 kb on + strand, within Shewana3_3961 at 4759.958 kb on + strand, within Shewana3_3961 at 4759.971 kb on - strand, within Shewana3_3961 at 4760.077 kb on - strand, within Shewana3_3961 at 4760.152 kb on + strand, within Shewana3_3961 at 4760.227 kb on - strand, within Shewana3_3961 at 4760.240 kb on + strand, within Shewana3_3961 at 4760.308 kb on - strand, within Shewana3_3961 at 4760.328 kb on - strand, within Shewana3_3961 at 4760.343 kb on - strand, within Shewana3_3961 at 4760.343 kb on - strand, within Shewana3_3961 at 4760.343 kb on - strand, within Shewana3_3961 at 4760.571 kb on - strand at 4760.590 kb on + strand at 4760.604 kb on - strand at 4760.606 kb on + strand at 4760.621 kb on - strand, within Shewana3_3962 at 4760.621 kb on - strand, within Shewana3_3962 at 4760.715 kb on - strand, within Shewana3_3962
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,757,940 - +0.3 4,757,940 - -0.2 4,757,965 - -0.4 4,757,988 + -0.2 4,757,988 - -0.4 4,758,034 + -2.3 4,758,059 + +0.4 4,758,312 + Shewana3_3959 0.26 -0.2 4,758,712 - -1.6 4,758,819 + +1.4 4,758,819 + -0.3 4,758,819 + +0.3 4,758,862 + -1.9 4,758,870 - +0.2 4,758,888 - +0.6 4,758,910 + -0.1 4,758,934 - +0.4 4,759,157 + Shewana3_3960 0.23 -0.5 4,759,234 + Shewana3_3960 0.32 -1.3 4,759,285 + Shewana3_3960 0.37 -0.6 4,759,374 + Shewana3_3960 0.46 -1.6 4,759,497 + Shewana3_3960 0.59 -0.3 4,759,543 + Shewana3_3960 0.64 +0.0 4,759,630 + Shewana3_3960 0.74 -0.7 4,759,666 + Shewana3_3960 0.77 -0.8 4,759,733 + Shewana3_3960 0.85 -0.8 4,759,897 - +0.0 4,759,940 + +1.0 4,759,947 - Shewana3_3961 0.10 +0.5 4,759,948 - Shewana3_3961 0.11 +0.3 4,759,958 + Shewana3_3961 0.12 -0.2 4,759,958 + Shewana3_3961 0.12 -1.4 4,759,971 - Shewana3_3961 0.14 +0.4 4,760,077 - Shewana3_3961 0.29 -0.1 4,760,152 + Shewana3_3961 0.40 -1.4 4,760,227 - Shewana3_3961 0.51 +0.6 4,760,240 + Shewana3_3961 0.53 -0.9 4,760,308 - Shewana3_3961 0.63 -0.2 4,760,328 - Shewana3_3961 0.66 +0.3 4,760,343 - Shewana3_3961 0.68 +0.4 4,760,343 - Shewana3_3961 0.68 +0.2 4,760,343 - Shewana3_3961 0.68 -0.1 4,760,571 - -0.2 4,760,590 + +0.4 4,760,604 - +0.4 4,760,606 + +0.7 4,760,621 - Shewana3_3962 0.12 +0.3 4,760,621 - Shewana3_3962 0.12 +0.0 4,760,715 - Shewana3_3962 0.32 +0.2
Or see this region's nucleotide sequence