Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3851

Experiment: Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0001 mg/ml
4,623,570	-		Shewana3_3850	0.88	+0.3
4,623,570	-		Shewana3_3850	0.88	+1.9
4,623,570	-		Shewana3_3850	0.88	+0.9
4,623,570	-		Shewana3_3850	0.88	+2.2
4,623,602	-				-0.4
4,623,710	+				-2.0
4,623,712	+				-0.4
4,623,712	+				+1.9
4,623,712	-				-0.2
4,623,720	-				-1.2
4,623,720	-				-0.5
4,623,720	-				-1.0
4,623,720	-				-1.0
4,623,720	-				-0.4
4,623,720	-				-0.5
4,623,723	+				+1.9
4,623,723	+				+1.2
4,623,724	+				+0.3
4,623,725	+				+0.9
4,623,733	-				-0.4
4,623,773	+				+0.3
4,623,817	+				+0.9
4,623,840	+				-0.7
4,623,850	-				-0.7
4,623,897	-				-0.3
4,623,938	-				-0.9
4,623,939	-				-1.5
4,623,959	+				+0.3
4,623,964	+				-2.1
4,623,970	-				-0.3
4,623,970	-				-1.6
4,623,970	-				-1.2
4,623,970	-				-0.0
4,623,977	+				-2.3
4,623,977	+				-0.8
4,623,977	-				-0.7
4,623,977	-				-0.8
4,623,977	-				-1.3
4,623,991	-				-0.8
4,624,033	+				-2.0
4,624,041	-				-0.5
4,624,043	+				-1.4
4,624,082	+				-3.6
4,624,082	+				-0.1
4,624,082	+				-0.7
4,624,082	+				+0.8
4,624,082	+				-0.8
4,624,082	+				-0.1
4,624,089	+				-1.1
4,624,089	+				-2.2
4,624,090	-				-0.2
4,624,090	-				-0.7
4,624,090	-				-0.5
4,624,090	-				-0.2
4,624,096	-				-0.7
4,624,096	-				-0.8
4,624,100	+				-2.0
4,624,108	-				-0.4
4,624,139	+				-0.6
4,624,139	+				-1.3
4,624,139	+				-1.3
4,624,139	+				-0.8
4,624,139	+				-0.4
4,624,139	+				-0.7
4,624,146	+				-2.6
4,624,147	-				-0.9
4,624,147	-				-2.1
4,624,147	-				+0.9
4,624,147	-				-1.4
4,624,147	-				-0.7
4,624,147	-				-2.2
4,624,147	-				-0.3
4,624,148	+				-1.6
4,624,154	-				-0.1
4,624,156	-				-1.1
4,624,162	+				-0.3
4,624,162	+				-0.6
4,624,162	+				-1.0
4,624,162	+				-1.4
4,624,167	+				-0.9
4,624,170	-				-2.4
4,624,184	-				-2.5
4,624,201	+				-3.7
4,624,202	+				-2.9
4,624,207	+				-1.7
4,624,207	+				+0.5
4,624,209	-				-1.4
4,624,215	-				-1.5
4,624,215	-				-1.4
4,624,219	-				-1.9
4,624,222	+				-2.0
4,624,222	+				-1.3
4,624,222	+				-1.3
4,624,222	+				-0.9
4,624,230	-				-1.3
4,624,230	-				-0.8
4,624,232	+				+0.5
4,624,232	+				-1.4
4,624,232	+				-0.8
4,624,232	+				-2.6
4,624,232	+				-0.5
4,624,234	+				-1.4
4,624,234	+				-1.9
4,624,240	-				-0.9
4,624,240	-				-2.4
4,624,240	-				-1.3
4,624,240	-				+0.1
4,624,240	-				-0.3
4,624,240	-				-1.2
4,624,240	-				-0.5
4,624,241	+				+1.2
4,624,241	+				-0.9
4,624,242	-				-0.5
4,624,242	-				-1.2
4,624,254	-				-0.0
4,624,254	-				-1.0
4,624,273	-				-0.4
4,624,302	+				-1.9
4,624,367	+				-2.2
4,624,405	+				-0.2
4,624,411	+				-0.8
4,624,413	+				-0.3
4,624,413	+				-0.1
4,624,413	+				-2.3
4,624,419	-				-0.8
4,624,421	-				-1.1
4,624,421	-				-1.2
4,624,421	-				-1.1
4,624,467	-				+0.3
4,624,499	+				-0.8
4,624,507	-				+0.2
4,624,507	-				-1.3
4,624,550	-				-2.1
4,624,671	+				-0.2
4,624,673	+				-1.9
4,624,681	-		Shewana3_3851	0.11	-1.8
4,624,694	+		Shewana3_3851	0.12	-0.1
4,624,696	-		Shewana3_3851	0.12	-1.1
4,624,702	-		Shewana3_3851	0.13	-0.9
4,624,711	+		Shewana3_3851	0.13	-1.4
4,624,712	+		Shewana3_3851	0.13	-1.3
4,624,724	-		Shewana3_3851	0.14	-0.4
4,624,729	+		Shewana3_3851	0.15	-0.2
4,624,731	-		Shewana3_3851	0.15	+0.3
4,624,737	-		Shewana3_3851	0.16	-1.0
4,624,739	+		Shewana3_3851	0.16	+0.6
4,624,749	-		Shewana3_3851	0.17	-0.4
4,624,749	-		Shewana3_3851	0.17	-1.1
4,624,749	-		Shewana3_3851	0.17	-2.1
4,624,842	+				+1.9
4,624,842	+		Shewana3_3851	0.25	-0.1
4,624,850	-		Shewana3_3851	0.25	-1.8
4,624,853	+		Shewana3_3851	0.26	-2.8
4,624,853	+		Shewana3_3851	0.26	-1.5
4,624,894	+		Shewana3_3851	0.29	+0.3
4,624,920	-		Shewana3_3851	0.32	-1.1
4,624,922	+		Shewana3_3851	0.32	+1.9
4,624,935	+		Shewana3_3851	0.33	+1.3
4,624,936	+		Shewana3_3851	0.33	-2.0
4,624,936	+		Shewana3_3851	0.33	+0.9
4,624,943	-		Shewana3_3851	0.34	-1.9
4,624,944	-		Shewana3_3851	0.34	-2.6
4,625,027	+		Shewana3_3851	0.41	-0.9
4,625,029	-		Shewana3_3851	0.41	-1.7
4,625,029	-		Shewana3_3851	0.41	-1.8
4,625,035	+		Shewana3_3851	0.42	-0.3
4,625,052	+		Shewana3_3851	0.43	-1.5
4,625,131	-		Shewana3_3851	0.50	-1.9
4,625,154	+		Shewana3_3851	0.52	+0.5
4,625,154	+		Shewana3_3851	0.52	-0.9
4,625,154	+		Shewana3_3851	0.52	-0.4
4,625,154	+		Shewana3_3851	0.52	+0.4
4,625,154	+		Shewana3_3851	0.52	-0.6
4,625,154	+		Shewana3_3851	0.52	-0.7
4,625,154	+		Shewana3_3851	0.52	-0.6
4,625,154	+		Shewana3_3851	0.52	-0.8
4,625,154	+		Shewana3_3851	0.52	+0.1
4,625,154	+		Shewana3_3851	0.52	-0.7
4,625,154	+		Shewana3_3851	0.52	+0.5
4,625,154	+		Shewana3_3851	0.52	-1.1
4,625,154	+		Shewana3_3851	0.52	-1.6
4,625,162	-		Shewana3_3851	0.53	-1.1
4,625,162	-		Shewana3_3851	0.53	-0.9
4,625,162	-		Shewana3_3851	0.53	-2.8
4,625,162	-		Shewana3_3851	0.53	-2.6
4,625,162	-		Shewana3_3851	0.53	-0.8
4,625,167	-		Shewana3_3851	0.53	+0.3
4,625,168	+		Shewana3_3851	0.53	-1.4
4,625,179	+		Shewana3_3851	0.54	+0.2
4,625,184	+		Shewana3_3851	0.55	-1.2
4,625,187	-		Shewana3_3851	0.55	-1.6
4,625,187	-		Shewana3_3851	0.55	-2.4
4,625,187	-		Shewana3_3851	0.55	-0.7
4,625,187	-		Shewana3_3851	0.55	-1.6
4,625,194	+		Shewana3_3851	0.56	-1.9
4,625,194	+		Shewana3_3851	0.56	-0.8
4,625,201	+		Shewana3_3851	0.56	-0.4
4,625,201	+		Shewana3_3851	0.56	-0.1
4,625,201	+		Shewana3_3851	0.56	-0.4
4,625,201	+		Shewana3_3851	0.56	-0.6
4,625,202	-		Shewana3_3851	0.56	-0.1
4,625,209	-		Shewana3_3851	0.57	+1.9
4,625,210	-		Shewana3_3851	0.57	-0.8
4,625,219	+		Shewana3_3851	0.58	-1.5
4,625,219	+		Shewana3_3851	0.58	-0.4
4,625,221	+		Shewana3_3851	0.58	-1.4
4,625,238	+		Shewana3_3851	0.59	-0.0
4,625,238	+		Shewana3_3851	0.59	+0.4
4,625,246	-		Shewana3_3851	0.60	+0.4
4,625,246	-		Shewana3_3851	0.60	-1.0
4,625,246	-		Shewana3_3851	0.60	-1.8
4,625,257	+		Shewana3_3851	0.61	-0.6
4,625,271	+		Shewana3_3851	0.62	-0.7
4,625,274	+		Shewana3_3851	0.63	+0.4
4,625,282	-		Shewana3_3851	0.63	-1.7
4,625,282	-		Shewana3_3851	0.63	-0.1
4,625,284	+		Shewana3_3851	0.63	-0.2
4,625,284	+		Shewana3_3851	0.63	-1.0
4,625,284	+		Shewana3_3851	0.63	-1.0
4,625,292	-		Shewana3_3851	0.64	-2.1
4,625,292	-		Shewana3_3851	0.64	-1.5
4,625,292	-		Shewana3_3851	0.64	-0.8
4,625,326	-		Shewana3_3851	0.67	-1.2
4,625,335	+		Shewana3_3851	0.68	-0.6
4,625,335	+		Shewana3_3851	0.68	+1.3
4,625,339	+		Shewana3_3851	0.68	-0.2
4,625,339	+		Shewana3_3851	0.68	-0.3
4,625,339	+		Shewana3_3851	0.68	-0.3
4,625,347	-		Shewana3_3851	0.69	-3.6
4,625,347	-		Shewana3_3851	0.69	-1.0
4,625,349	+		Shewana3_3851	0.69	-0.6
4,625,349	+		Shewana3_3851	0.69	-1.7
4,625,381	+		Shewana3_3851	0.72	-0.9
4,625,389	-		Shewana3_3851	0.73	-0.6
4,625,402	-		Shewana3_3851	0.74	+0.1
4,625,407	-		Shewana3_3851	0.74	+0.3
4,625,455	+		Shewana3_3851	0.78	-0.3
4,625,455	+		Shewana3_3851	0.78	-2.1
4,625,455	+		Shewana3_3851	0.78	-0.4
4,625,455	+		Shewana3_3851	0.78	-0.9
4,625,463	-		Shewana3_3851	0.79	-1.9
4,625,463	-		Shewana3_3851	0.79	-3.6
4,625,463	-		Shewana3_3851	0.79	-0.2
4,625,463	-		Shewana3_3851	0.79	-1.4
4,625,490	+		Shewana3_3851	0.81	-0.2
4,625,561	-		Shewana3_3851	0.88	-3.2
4,625,605	+				+0.5
4,625,671	+				-0.1
4,625,689	-				+0.5
4,625,689	-				+0.3
4,625,689	-				-1.8
4,625,737	+				+0.1
4,625,737	+				-0.5
4,625,745	+				-0.5
4,625,745	+				-0.2
4,625,750	+				+0.7
4,625,753	-				-2.1
4,625,768	+				-0.2
4,625,783	+				+0.4
4,625,783	+				+0.3
4,625,791	-				-0.2
4,625,791	-				-1.8
4,625,799	-				-0.4
4,625,799	-				-1.0
4,625,850	+				+0.4
4,625,850	+				+0.2
4,625,850	+				-0.2
4,625,858	-				-0.6
4,625,858	-				+0.5
4,625,893	+				+0.4
4,625,901	-				-0.9
4,625,915	-				-1.8
4,625,950	-				-1.4
4,625,960	+				-0.0
4,625,987	-				-1.6
4,626,031	+				-0.2
4,626,053	-				+0.3
4,626,055	+				-0.1
4,626,060	+				-0.5
4,626,060	+				+0.0
4,626,190	+				-0.5
4,626,201	-				+0.4
4,626,203	+				+1.9
4,626,203	+				-0.1
4,626,210	+				-1.4
4,626,211	-				+0.3
4,626,211	-				+0.1
4,626,281	-				+0.2
4,626,286	+				-1.3
4,626,331	-				+0.2
4,626,391	-				-0.3
4,626,595	+				-1.8
4,626,614	-				+0.4
4,626,614	-				+0.0
4,626,616	+				-2.0
4,626,644	+		Shewana3_3852	0.11	-1.3
4,626,652	+		Shewana3_3852	0.12	-0.8
4,626,652	+		Shewana3_3852	0.12	-1.2
4,626,660	-		Shewana3_3852	0.13	-0.1