Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3797 and Shewana3_3798 are separated by 176 nucleotides Shewana3_3798 and Shewana3_3799 are separated by 22 nucleotides Shewana3_3799 and Shewana3_3800 are separated by 252 nucleotides
Shewana3_3797: Shewana3_3797 - nucleotidase (RefSeq), at 4,562,861 to 4,563,577
_3797
Shewana3_3798: Shewana3_3798 - hypothetical protein (RefSeq), at 4,563,754 to 4,564,215
_3798
Shewana3_3799: Shewana3_3799 - hypothetical protein (RefSeq), at 4,564,238 to 4,564,729
_3799
Shewana3_3800: Shewana3_3800 - LysR family transcriptional regulator (RefSeq), at 4,564,982 to 4,565,878
_3800
Position (kb) 4563
4564
4565 Strain fitness (log2 ratio) -1
0
1 at 4562.880 kb on + strand at 4563.068 kb on + strand, within Shewana3_3797 at 4563.171 kb on + strand, within Shewana3_3797 at 4563.251 kb on + strand, within Shewana3_3797 at 4563.582 kb on - strand at 4563.582 kb on - strand at 4563.904 kb on - strand, within Shewana3_3798 at 4563.937 kb on - strand, within Shewana3_3798 at 4564.039 kb on - strand, within Shewana3_3798 at 4564.041 kb on + strand, within Shewana3_3798 at 4564.157 kb on - strand, within Shewana3_3798 at 4564.189 kb on - strand at 4564.393 kb on - strand, within Shewana3_3799 at 4564.411 kb on - strand, within Shewana3_3799 at 4564.620 kb on + strand, within Shewana3_3799 at 4564.630 kb on - strand, within Shewana3_3799 at 4564.735 kb on - strand at 4564.930 kb on - strand at 4564.993 kb on - strand at 4565.065 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,562,880 + +0.9 4,563,068 + Shewana3_3797 0.29 +0.6 4,563,171 + Shewana3_3797 0.43 -0.1 4,563,251 + Shewana3_3797 0.54 +0.2 4,563,582 - +0.1 4,563,582 - +0.5 4,563,904 - Shewana3_3798 0.32 +0.4 4,563,937 - Shewana3_3798 0.40 +0.4 4,564,039 - Shewana3_3798 0.62 +0.6 4,564,041 + Shewana3_3798 0.62 +0.7 4,564,157 - Shewana3_3798 0.87 +0.1 4,564,189 - +0.5 4,564,393 - Shewana3_3799 0.32 -0.1 4,564,411 - Shewana3_3799 0.35 +0.0 4,564,620 + Shewana3_3799 0.78 -0.6 4,564,630 - Shewana3_3799 0.80 +0.1 4,564,735 - +0.2 4,564,930 - +0.5 4,564,993 - +0.3 4,565,065 + +0.3
Or see this region's nucleotide sequence