Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3676 and Shewana3_3677 overlap by 1 nucleotides Shewana3_3677 and Shewana3_3678 are separated by 11 nucleotides Shewana3_3678 and Shewana3_3679 are separated by 487 nucleotides
Shewana3_3676: Shewana3_3676 - SPFH domain-containing protein/band 7 family protein (RefSeq), at 4,415,522 to 4,416,454
_3676
Shewana3_3677: Shewana3_3677 - SPFH domain-containing protein/band 7 family protein (RefSeq), at 4,416,454 to 4,417,389
_3677
Shewana3_3678: Shewana3_3678 - hypothetical protein (RefSeq), at 4,417,401 to 4,417,871
_3678
Shewana3_3679: Shewana3_3679 - hypothetical protein (RefSeq), at 4,418,359 to 4,419,111
_3679
Position (kb)
4416
4417
4418 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4415.626 kb on + strand, within Shewana3_3676 at 4415.795 kb on - strand, within Shewana3_3676 at 4415.835 kb on + strand, within Shewana3_3676 at 4415.925 kb on + strand, within Shewana3_3676 at 4415.925 kb on + strand, within Shewana3_3676 at 4416.034 kb on + strand, within Shewana3_3676 at 4416.091 kb on - strand, within Shewana3_3676 at 4416.293 kb on - strand, within Shewana3_3676 at 4416.515 kb on + strand at 4416.563 kb on - strand, within Shewana3_3677 at 4416.714 kb on + strand, within Shewana3_3677 at 4416.788 kb on + strand, within Shewana3_3677 at 4416.948 kb on + strand, within Shewana3_3677 at 4417.010 kb on + strand, within Shewana3_3677 at 4417.014 kb on + strand, within Shewana3_3677 at 4417.044 kb on + strand, within Shewana3_3677 at 4417.177 kb on + strand, within Shewana3_3677 at 4417.178 kb on - strand, within Shewana3_3677 at 4417.337 kb on + strand at 4417.494 kb on - strand, within Shewana3_3678 at 4417.661 kb on + strand, within Shewana3_3678 at 4417.903 kb on + strand at 4418.232 kb on + strand at 4418.299 kb on - strand at 4418.311 kb on + strand at 4418.314 kb on + strand at 4418.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,415,626 + Shewana3_3676 0.11 -0.9 4,415,795 - Shewana3_3676 0.29 +0.0 4,415,835 + Shewana3_3676 0.34 -0.6 4,415,925 + Shewana3_3676 0.43 -1.5 4,415,925 + Shewana3_3676 0.43 -0.8 4,416,034 + Shewana3_3676 0.55 -1.7 4,416,091 - Shewana3_3676 0.61 +0.1 4,416,293 - Shewana3_3676 0.83 +0.2 4,416,515 + +2.2 4,416,563 - Shewana3_3677 0.12 -0.7 4,416,714 + Shewana3_3677 0.28 -1.2 4,416,788 + Shewana3_3677 0.36 +0.0 4,416,948 + Shewana3_3677 0.53 -0.3 4,417,010 + Shewana3_3677 0.59 -0.5 4,417,014 + Shewana3_3677 0.60 -0.9 4,417,044 + Shewana3_3677 0.63 -1.1 4,417,177 + Shewana3_3677 0.77 -0.2 4,417,178 - Shewana3_3677 0.77 -0.2 4,417,337 + -2.1 4,417,494 - Shewana3_3678 0.20 -1.0 4,417,661 + Shewana3_3678 0.55 -0.3 4,417,903 + +0.6 4,418,232 + -0.3 4,418,299 - -0.9 4,418,311 + +0.5 4,418,314 + -0.0 4,418,381 - +0.1
Or see this region's nucleotide sequence