Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3664

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3663 and Shewana3_3664 are separated by 14 nucleotidesShewana3_3664 and Shewana3_3665 overlap by 14 nucleotidesShewana3_3665 and Shewana3_3666 overlap by 4 nucleotides Shewana3_3663: Shewana3_3663 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 4,400,117 to 4,401,802 _3663 Shewana3_3664: Shewana3_3664 - MSHA biogenesis protein MshK (RefSeq), at 4,401,817 to 4,402,134 _3664 Shewana3_3665: Shewana3_3665 - MSHA biogenesis protein MshJ (RefSeq), at 4,402,121 to 4,402,771 _3665 Shewana3_3666: Shewana3_3666 - fimbrial assembly family protein (RefSeq), at 4,402,768 to 4,403,370 _3666 Position (kb) 4401 4402 4403Strain fitness (log2 ratio) -2 -1 0 1at 4400.870 kb on + strand, within Shewana3_3663at 4400.944 kb on - strand, within Shewana3_3663at 4401.027 kb on + strand, within Shewana3_3663at 4401.393 kb on - strand, within Shewana3_3663at 4401.432 kb on + strand, within Shewana3_3663at 4401.440 kb on - strand, within Shewana3_3663at 4401.458 kb on - strand, within Shewana3_3663at 4401.488 kb on + strand, within Shewana3_3663at 4401.517 kb on + strand, within Shewana3_3663at 4401.573 kb on - strand, within Shewana3_3663at 4401.637 kb on + strandat 4401.754 kb on + strandat 4401.861 kb on + strand, within Shewana3_3664at 4401.896 kb on + strand, within Shewana3_3664at 4401.904 kb on - strand, within Shewana3_3664at 4401.906 kb on + strand, within Shewana3_3664at 4401.914 kb on - strand, within Shewana3_3664at 4401.926 kb on + strand, within Shewana3_3664at 4402.051 kb on + strand, within Shewana3_3664at 4402.112 kb on + strandat 4402.247 kb on - strand, within Shewana3_3665at 4402.740 kb on - strandat 4402.825 kb on - strandat 4403.052 kb on + strand, within Shewana3_3666at 4403.052 kb on + strand, within Shewana3_3666

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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4,400,870 + Shewana3_3663 0.45 -0.9
4,400,944 - Shewana3_3663 0.49 +0.6
4,401,027 + Shewana3_3663 0.54 -0.9
4,401,393 - Shewana3_3663 0.76 -0.2
4,401,432 + Shewana3_3663 0.78 -0.6
4,401,440 - Shewana3_3663 0.78 +0.4
4,401,458 - Shewana3_3663 0.80 -0.1
4,401,488 + Shewana3_3663 0.81 -0.8
4,401,517 + Shewana3_3663 0.83 +0.7
4,401,573 - Shewana3_3663 0.86 +0.4
4,401,637 + +0.0
4,401,754 + -1.1
4,401,861 + Shewana3_3664 0.14 -1.2
4,401,896 + Shewana3_3664 0.25 -2.0
4,401,904 - Shewana3_3664 0.27 -0.5
4,401,906 + Shewana3_3664 0.28 -0.1
4,401,914 - Shewana3_3664 0.31 +0.1
4,401,926 + Shewana3_3664 0.34 -1.7
4,402,051 + Shewana3_3664 0.74 -0.7
4,402,112 + +0.9
4,402,247 - Shewana3_3665 0.19 +0.3
4,402,740 - +0.2
4,402,825 - +0.8
4,403,052 + Shewana3_3666 0.47 -0.6
4,403,052 + Shewana3_3666 0.47 -2.1

Or see this region's nucleotide sequence