Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3655 and Shewana3_3656 are separated by 345 nucleotides Shewana3_3656 and Shewana3_3657 are separated by 52 nucleotides Shewana3_3657 and Shewana3_3658 are separated by 75 nucleotides
Shewana3_3654: Shewana3_3654 - no description, at 4,390,820 to 4,393,056
_3654
Shewana3_3655: Shewana3_3655 - IS4 family transposase (RefSeq), at 4,391,111 to 4,392,724
_3655
Shewana3_3656: Shewana3_3656 - methylation site containing protein (RefSeq), at 4,393,070 to 4,393,579
_3656
Shewana3_3657: Shewana3_3657 - methylation site containing protein (RefSeq), at 4,393,632 to 4,394,249
_3657
Shewana3_3658: Shewana3_3658 - hypothetical protein (RefSeq), at 4,394,325 to 4,394,822
_3658
Position (kb) 4393
4394 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4392.834 kb on + strand at 4392.918 kb on + strand at 4392.919 kb on + strand at 4392.919 kb on + strand at 4392.919 kb on + strand at 4392.926 kb on - strand at 4392.926 kb on - strand at 4392.935 kb on + strand at 4393.063 kb on - strand at 4393.069 kb on - strand at 4393.159 kb on - strand, within Shewana3_3656 at 4393.295 kb on + strand, within Shewana3_3656 at 4393.295 kb on + strand, within Shewana3_3656 at 4393.303 kb on - strand, within Shewana3_3656 at 4393.303 kb on - strand, within Shewana3_3656 at 4393.303 kb on - strand, within Shewana3_3656 at 4393.303 kb on - strand, within Shewana3_3656 at 4393.303 kb on - strand, within Shewana3_3656 at 4393.368 kb on - strand, within Shewana3_3656 at 4393.379 kb on - strand, within Shewana3_3656 at 4393.384 kb on - strand, within Shewana3_3656 at 4393.384 kb on - strand, within Shewana3_3656 at 4393.417 kb on + strand, within Shewana3_3656 at 4393.448 kb on + strand, within Shewana3_3656 at 4393.448 kb on + strand, within Shewana3_3656 at 4393.456 kb on - strand, within Shewana3_3656 at 4393.456 kb on - strand, within Shewana3_3656 at 4393.461 kb on - strand, within Shewana3_3656 at 4393.654 kb on - strand at 4393.667 kb on - strand at 4393.667 kb on - strand at 4393.681 kb on + strand at 4393.683 kb on + strand at 4393.689 kb on - strand at 4393.689 kb on - strand at 4393.689 kb on - strand at 4393.702 kb on - strand, within Shewana3_3657 at 4393.729 kb on + strand, within Shewana3_3657 at 4393.861 kb on + strand, within Shewana3_3657 at 4393.861 kb on + strand, within Shewana3_3657 at 4393.867 kb on - strand, within Shewana3_3657 at 4393.869 kb on - strand, within Shewana3_3657 at 4394.127 kb on + strand, within Shewana3_3657 at 4394.406 kb on + strand, within Shewana3_3658 at 4394.407 kb on + strand, within Shewana3_3658 at 4394.414 kb on - strand, within Shewana3_3658 at 4394.558 kb on + strand, within Shewana3_3658
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,392,834 + +0.3 4,392,918 + -1.2 4,392,919 + -0.7 4,392,919 + -0.1 4,392,919 + -0.6 4,392,926 - +1.7 4,392,926 - +1.0 4,392,935 + -1.3 4,393,063 - +0.5 4,393,069 - -0.2 4,393,159 - Shewana3_3656 0.17 +0.8 4,393,295 + Shewana3_3656 0.44 -0.1 4,393,295 + Shewana3_3656 0.44 -0.1 4,393,303 - Shewana3_3656 0.46 +0.6 4,393,303 - Shewana3_3656 0.46 +0.7 4,393,303 - Shewana3_3656 0.46 +0.6 4,393,303 - Shewana3_3656 0.46 +0.6 4,393,303 - Shewana3_3656 0.46 +1.0 4,393,368 - Shewana3_3656 0.58 +0.5 4,393,379 - Shewana3_3656 0.61 +0.9 4,393,384 - Shewana3_3656 0.62 +0.8 4,393,384 - Shewana3_3656 0.62 +0.7 4,393,417 + Shewana3_3656 0.68 +0.3 4,393,448 + Shewana3_3656 0.74 -1.1 4,393,448 + Shewana3_3656 0.74 +0.3 4,393,456 - Shewana3_3656 0.76 +0.7 4,393,456 - Shewana3_3656 0.76 +1.0 4,393,461 - Shewana3_3656 0.77 +0.4 4,393,654 - +0.2 4,393,667 - +0.7 4,393,667 - +0.7 4,393,681 + -0.3 4,393,683 + -0.1 4,393,689 - +0.4 4,393,689 - +1.1 4,393,689 - -0.3 4,393,702 - Shewana3_3657 0.11 +0.2 4,393,729 + Shewana3_3657 0.16 -0.8 4,393,861 + Shewana3_3657 0.37 -1.3 4,393,861 + Shewana3_3657 0.37 -2.9 4,393,867 - Shewana3_3657 0.38 +0.2 4,393,869 - Shewana3_3657 0.38 +0.7 4,394,127 + Shewana3_3657 0.80 -1.5 4,394,406 + Shewana3_3658 0.16 -0.4 4,394,407 + Shewana3_3658 0.16 -1.3 4,394,414 - Shewana3_3658 0.18 +0.2 4,394,558 + Shewana3_3658 0.47 -0.7
Or see this region's nucleotide sequence