Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3634 and Shewana3_3635 are separated by 523 nucleotides Shewana3_3635 and Shewana3_3636 are separated by 145 nucleotides Shewana3_3636 and Shewana3_3637 are separated by 168 nucleotides
Shewana3_3634: Shewana3_3634 - amino acid permease-associated region (RefSeq), at 4,364,589 to 4,365,920
_3634
Shewana3_3635: Shewana3_3635 - hypothetical protein (RefSeq), at 4,366,444 to 4,366,983
_3635
Shewana3_3636: Shewana3_3636 - hypothetical protein (RefSeq), at 4,367,129 to 4,367,530
_3636
Shewana3_3637: Shewana3_3637 - hypothetical protein (RefSeq), at 4,367,699 to 4,368,850
_3637
Position (kb)
4366
4367 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4365.489 kb on + strand, within Shewana3_3634 at 4365.512 kb on - strand, within Shewana3_3634 at 4365.632 kb on + strand, within Shewana3_3634 at 4365.687 kb on + strand, within Shewana3_3634 at 4365.687 kb on + strand, within Shewana3_3634 at 4365.687 kb on + strand, within Shewana3_3634 at 4365.687 kb on + strand, within Shewana3_3634 at 4365.687 kb on + strand, within Shewana3_3634 at 4365.695 kb on - strand, within Shewana3_3634 at 4365.695 kb on - strand, within Shewana3_3634 at 4365.695 kb on - strand, within Shewana3_3634 at 4365.695 kb on - strand, within Shewana3_3634 at 4365.695 kb on - strand, within Shewana3_3634 at 4365.695 kb on - strand, within Shewana3_3634 at 4365.695 kb on - strand, within Shewana3_3634 at 4365.695 kb on - strand, within Shewana3_3634 at 4365.773 kb on + strand, within Shewana3_3634 at 4365.781 kb on - strand, within Shewana3_3634 at 4366.006 kb on - strand at 4366.217 kb on - strand at 4366.355 kb on - strand at 4366.361 kb on - strand at 4366.361 kb on - strand at 4366.499 kb on - strand, within Shewana3_3635 at 4366.560 kb on + strand, within Shewana3_3635 at 4366.615 kb on + strand, within Shewana3_3635 at 4366.726 kb on - strand, within Shewana3_3635 at 4366.765 kb on - strand, within Shewana3_3635 at 4366.914 kb on - strand, within Shewana3_3635 at 4366.914 kb on - strand, within Shewana3_3635 at 4366.961 kb on - strand at 4366.964 kb on + strand at 4367.254 kb on - strand, within Shewana3_3636 at 4367.270 kb on - strand, within Shewana3_3636 at 4367.272 kb on + strand, within Shewana3_3636 at 4367.283 kb on + strand, within Shewana3_3636 at 4367.464 kb on + strand, within Shewana3_3636 at 4367.789 kb on - strand at 4367.817 kb on - strand, within Shewana3_3637 at 4367.958 kb on - strand, within Shewana3_3637
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,365,489 + Shewana3_3634 0.68 -0.2 4,365,512 - Shewana3_3634 0.69 +0.8 4,365,632 + Shewana3_3634 0.78 -1.0 4,365,687 + Shewana3_3634 0.82 -0.7 4,365,687 + Shewana3_3634 0.82 -1.6 4,365,687 + Shewana3_3634 0.82 +0.4 4,365,687 + Shewana3_3634 0.82 -1.1 4,365,687 + Shewana3_3634 0.82 +0.2 4,365,695 - Shewana3_3634 0.83 +0.5 4,365,695 - Shewana3_3634 0.83 +0.1 4,365,695 - Shewana3_3634 0.83 +0.1 4,365,695 - Shewana3_3634 0.83 +0.7 4,365,695 - Shewana3_3634 0.83 +0.1 4,365,695 - Shewana3_3634 0.83 +0.3 4,365,695 - Shewana3_3634 0.83 +0.4 4,365,695 - Shewana3_3634 0.83 +0.7 4,365,773 + Shewana3_3634 0.89 -1.5 4,365,781 - Shewana3_3634 0.89 +0.7 4,366,006 - -0.2 4,366,217 - -0.1 4,366,355 - +0.4 4,366,361 - +0.2 4,366,361 - -0.5 4,366,499 - Shewana3_3635 0.10 -1.6 4,366,560 + Shewana3_3635 0.21 -0.5 4,366,615 + Shewana3_3635 0.32 -0.0 4,366,726 - Shewana3_3635 0.52 +1.9 4,366,765 - Shewana3_3635 0.59 -1.6 4,366,914 - Shewana3_3635 0.87 -1.6 4,366,914 - Shewana3_3635 0.87 -1.5 4,366,961 - -1.8 4,366,964 + +0.2 4,367,254 - Shewana3_3636 0.31 +1.2 4,367,270 - Shewana3_3636 0.35 -0.2 4,367,272 + Shewana3_3636 0.36 -1.6 4,367,283 + Shewana3_3636 0.38 -0.6 4,367,464 + Shewana3_3636 0.83 +0.0 4,367,789 - -0.6 4,367,817 - Shewana3_3637 0.10 -1.1 4,367,958 - Shewana3_3637 0.22 +0.1
Or see this region's nucleotide sequence