Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3623

Experiment: Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0001 mg/ml
4,349,701	-		Shewana3_3622	0.63	-0.8
4,349,707	-		Shewana3_3622	0.63	-2.4
4,349,800	+		Shewana3_3622	0.72	-2.4
4,349,800	+		Shewana3_3622	0.72	-1.6
4,349,808	-		Shewana3_3622	0.72	-1.7
4,349,808	-		Shewana3_3622	0.72	-2.0
4,349,808	-		Shewana3_3622	0.72	-2.5
4,349,960	+		Shewana3_3622	0.86	-0.6
4,350,002	+		Shewana3_3622	0.90	-0.3
4,350,122	+				+0.5
4,350,130	-				-1.4
4,350,134	+				+0.4
4,350,134	-				-0.5
4,350,411	+				-0.4
4,350,435	+				-0.0
4,350,435	+				+2.9
4,350,443	-				+0.3
4,350,453	+				-0.4
4,350,461	-				+0.2
4,350,461	-				+0.2
4,350,461	-				+0.4
4,350,465	+				-1.3
4,350,507	+				-2.0
4,350,536	+				-1.3
4,350,554	+				+0.3
4,350,564	+				-1.7
4,350,564	+				+0.3
4,350,564	+				-2.4
4,350,572	-				+0.4
4,350,714	+				+0.2
4,350,714	+				-1.6
4,350,714	+				-0.7
4,350,714	+				+0.2
4,350,714	+				-2.3
4,350,714	+				+0.2
4,350,714	+				+0.2
4,350,714	+				-0.8
4,350,714	+				+0.4
4,350,714	+				-1.4
4,350,714	+				-0.2
4,350,714	+				-0.0
4,350,714	+				+0.1
4,350,721	+				-0.9
4,350,722	-				-0.1
4,350,722	-				-0.3
4,350,722	-				+1.4
4,350,722	-				+0.0
4,350,722	-				-0.7
4,350,722	-				+0.6
4,350,722	-				-0.2
4,350,722	-				-0.5
4,350,722	-				-0.5
4,350,722	-				+0.4
4,350,722	-				+0.4
4,350,722	-				-0.3
4,350,722	-				-1.1
4,350,722	-				-0.0
4,350,722	-				-0.8
4,350,722	-				-0.2
4,350,724	-				-0.2
4,350,724	-				-1.9
4,350,733	+				-3.0
4,350,747	+		Shewana3_3623	0.10	+0.5
4,350,755	-		Shewana3_3623	0.11	-0.2
4,350,804	-		Shewana3_3623	0.17	-1.0
4,350,804	-		Shewana3_3623	0.17	+0.8
4,350,822	-		Shewana3_3623	0.18	-0.4
4,350,845	+		Shewana3_3623	0.21	-1.1
4,350,845	-		Shewana3_3623	0.21	-0.9
4,350,845	-		Shewana3_3623	0.21	-1.0
4,350,847	+		Shewana3_3623	0.21	-0.1
4,350,849	+		Shewana3_3623	0.21	-0.6
4,350,855	-		Shewana3_3623	0.22	+0.1
4,350,855	-		Shewana3_3623	0.22	-0.6
4,350,855	-		Shewana3_3623	0.22	-1.3
4,350,855	-		Shewana3_3623	0.22	+0.1
4,350,871	+		Shewana3_3623	0.24	-1.7
4,350,871	+		Shewana3_3623	0.24	-1.1
4,350,871	+		Shewana3_3623	0.24	-2.4
4,350,879	-		Shewana3_3623	0.25	-0.8
4,350,879	-		Shewana3_3623	0.25	+0.8
4,350,879	-		Shewana3_3623	0.25	-1.1
4,350,882	+		Shewana3_3623	0.25	-1.4
4,350,883	+		Shewana3_3623	0.25	+0.5
4,350,890	-		Shewana3_3623	0.26	-1.4
4,350,890	-		Shewana3_3623	0.26	-0.8
4,350,890	-		Shewana3_3623	0.26	-1.5
4,350,891	-		Shewana3_3623	0.26	-0.2
4,350,891	-		Shewana3_3623	0.26	-1.2
4,350,903	+		Shewana3_3623	0.27	+1.1
4,351,003	-		Shewana3_3623	0.38	-1.4
4,351,003	-		Shewana3_3623	0.38	-0.1
4,351,004	-		Shewana3_3623	0.38	-1.8
4,351,011	+		Shewana3_3623	0.39	-0.6
4,351,023	+		Shewana3_3623	0.40	+1.0
4,351,041	-		Shewana3_3623	0.42	-1.6
4,351,071	-		Shewana3_3623	0.45	+0.3
4,351,073	+		Shewana3_3623	0.46	-0.4
4,351,073	+		Shewana3_3623	0.46	-1.3
4,351,073	+		Shewana3_3623	0.46	-0.3
4,351,081	-		Shewana3_3623	0.46	+0.9
4,351,081	-		Shewana3_3623	0.46	-1.9
4,351,081	-		Shewana3_3623	0.46	-0.9
4,351,083	+		Shewana3_3623	0.47	+0.3
4,351,083	+		Shewana3_3623	0.47	+0.9
4,351,083	+		Shewana3_3623	0.47	-0.8
4,351,083	+		Shewana3_3623	0.47	-1.8
4,351,091	-		Shewana3_3623	0.47	-0.4
4,351,091	-		Shewana3_3623	0.47	-0.3
4,351,122	+		Shewana3_3623	0.51	+0.9
4,351,139	-		Shewana3_3623	0.53	-0.1
4,351,141	+		Shewana3_3623	0.53	-1.6
4,351,200	+		Shewana3_3623	0.59	+0.9
4,351,200	+		Shewana3_3623	0.59	-0.7
4,351,212	+		Shewana3_3623	0.61	-0.5
4,351,217	+		Shewana3_3623	0.61	-0.5
4,351,218	+		Shewana3_3623	0.61	+0.9
4,351,232	+		Shewana3_3623	0.63	-1.6
4,351,232	+		Shewana3_3623	0.63	-0.8
4,351,232	+		Shewana3_3623	0.63	-0.3
4,351,232	+		Shewana3_3623	0.63	-2.1
4,351,232	+		Shewana3_3623	0.63	-1.4
4,351,240	-		Shewana3_3623	0.64	+0.3
4,351,240	-		Shewana3_3623	0.64	-2.1
4,351,240	-		Shewana3_3623	0.64	-2.6
4,351,240	-		Shewana3_3623	0.64	-1.4
4,351,240	-		Shewana3_3623	0.64	-1.5
4,351,240	-		Shewana3_3623	0.64	-1.7
4,351,240	-		Shewana3_3623	0.64	-0.1
4,351,240	-		Shewana3_3623	0.64	-0.9
4,351,240	-		Shewana3_3623	0.64	+0.2
4,351,240	-		Shewana3_3623	0.64	-0.4
4,351,240	-		Shewana3_3623	0.64	-0.7
4,351,240	-		Shewana3_3623	0.64	-0.3
4,351,242	+		Shewana3_3623	0.64	-0.3
4,351,250	-		Shewana3_3623	0.65	+0.9
4,351,250	-		Shewana3_3623	0.65	-0.1
4,351,253	-		Shewana3_3623	0.65	+0.3
4,351,253	-		Shewana3_3623	0.65	-0.6
4,351,262	+		Shewana3_3623	0.66	+0.3
4,351,262	-		Shewana3_3623	0.66	+1.9
4,351,269	+		Shewana3_3623	0.67	-0.1
4,351,299	-		Shewana3_3623	0.70	+1.6
4,351,324	+		Shewana3_3623	0.73	+0.3
4,351,341	-		Shewana3_3623	0.74	-0.4
4,351,352	+		Shewana3_3623	0.76	+1.9
4,351,352	-		Shewana3_3623	0.76	-0.1
4,351,393	+		Shewana3_3623	0.80	-0.4
4,351,393	+		Shewana3_3623	0.80	-0.8
4,351,393	+		Shewana3_3623	0.80	+0.5
4,351,393	+		Shewana3_3623	0.80	-1.4
4,351,393	+		Shewana3_3623	0.80	-1.7
4,351,393	+		Shewana3_3623	0.80	-0.3
4,351,393	+		Shewana3_3623	0.80	-1.4
4,351,401	-		Shewana3_3623	0.81	-0.6
4,351,401	-		Shewana3_3623	0.81	-0.7
4,351,401	-		Shewana3_3623	0.81	+0.1
4,351,401	-		Shewana3_3623	0.81	-1.8
4,351,401	-		Shewana3_3623	0.81	-1.3
4,351,401	-		Shewana3_3623	0.81	-0.7
4,351,401	-		Shewana3_3623	0.81	-1.5
4,351,404	+		Shewana3_3623	0.81	-1.4
4,351,404	+		Shewana3_3623	0.81	-0.8
4,351,404	+		Shewana3_3623	0.81	-0.0
4,351,412	-		Shewana3_3623	0.82	-1.2
4,351,437	+		Shewana3_3623	0.85	-1.4
4,351,439	+		Shewana3_3623	0.85	+0.2
4,351,459	+		Shewana3_3623	0.87	-0.4
4,351,459	+		Shewana3_3623	0.87	-0.9
4,351,492	+				-0.8
4,351,509	+				-0.4
4,351,509	+				-1.0
4,351,509	+				-1.5
4,351,509	+				+0.4
4,351,509	+				-0.5
4,351,509	+				-0.4
4,351,509	+				-1.6
4,351,509	+				-2.5
4,351,509	+				-1.6
4,351,509	+				-0.1
4,351,509	+				+1.9
4,351,510	+				-1.1
4,351,517	-				-0.0
4,351,517	-				+0.5
4,351,517	-				-1.8
4,351,517	-				-2.5
4,351,517	-				-0.6
4,351,517	-				-0.5
4,351,517	-				+0.4
4,351,517	-				-0.2
4,351,518	-				+0.3
4,351,518	-				-1.1
4,351,587	-				+0.3
4,351,619	+				-0.6
4,351,625	+				-1.2
4,351,681	-				-0.4
4,351,681	-				+0.3
4,351,683	+				-0.2
4,351,693	+				+0.1
4,351,697	+				-0.7
4,351,700	+				-0.1
4,351,700	+				-0.3
4,351,702	+				-0.2
4,351,702	+				-0.2
4,351,702	+				+0.7
4,351,703	-				-2.9
4,351,710	-				-0.2
4,351,710	-				-0.3
4,351,710	-				+2.9
4,351,712	+				+0.1
4,351,742	-				-0.4
4,351,747	+				+0.1
4,351,748	+				+0.5
4,351,748	+				+0.0
4,351,755	-				-1.0
4,351,809	+				+1.0
4,351,809	+				-0.4
4,351,809	+				+0.2
4,351,809	+				-0.2
4,351,809	+				+0.3
4,351,811	+				+0.0
4,351,817	-				-0.4
4,351,819	-				+0.9
4,351,833	-				+0.2
4,351,845	-				-1.2
4,351,855	-				-0.4
4,351,868	-				-1.0
4,351,949	+				+0.3
4,351,957	+				-0.9
4,351,957	+				+0.7
4,351,957	+				-0.2
4,351,957	+				-0.1
4,352,191	-				+0.2
4,352,195	-				-0.2
4,352,239	-				-1.0
4,352,239	-				-0.5
4,352,342	+		Shewana3_3624	0.14	-0.3
4,352,377	+		Shewana3_3624	0.18	+1.1
4,352,394	+		Shewana3_3624	0.20	-0.6
4,352,406	+		Shewana3_3624	0.22	-0.0
4,352,445	-		Shewana3_3624	0.27	-0.1
4,352,515	-		Shewana3_3624	0.36	-0.4