Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3606 and Shewana3_3607 are separated by 10 nucleotides Shewana3_3607 and Shewana3_3608 are separated by 189 nucleotides
Shewana3_3606: Shewana3_3606 - cytochrome c family protein (RefSeq), at 4,330,531 to 4,331,589
_3606
Shewana3_3607: Shewana3_3607 - cytochrome c family protein (RefSeq), at 4,331,600 to 4,332,226
_3607
Shewana3_3608: Shewana3_3608 - response regulator receiver protein (RefSeq), at 4,332,416 to 4,333,444
_3608
Position (kb) 4331
4332
4333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4330.606 kb on - strand at 4330.657 kb on - strand, within Shewana3_3606 at 4330.657 kb on - strand, within Shewana3_3606 at 4330.733 kb on - strand, within Shewana3_3606 at 4330.783 kb on - strand, within Shewana3_3606 at 4330.786 kb on + strand, within Shewana3_3606 at 4330.803 kb on + strand, within Shewana3_3606 at 4330.811 kb on - strand, within Shewana3_3606 at 4330.812 kb on - strand, within Shewana3_3606 at 4330.861 kb on + strand, within Shewana3_3606 at 4330.861 kb on + strand, within Shewana3_3606 at 4330.869 kb on - strand, within Shewana3_3606 at 4330.894 kb on - strand, within Shewana3_3606 at 4330.903 kb on + strand, within Shewana3_3606 at 4330.918 kb on - strand, within Shewana3_3606 at 4330.997 kb on - strand, within Shewana3_3606 at 4331.011 kb on - strand, within Shewana3_3606 at 4331.056 kb on - strand, within Shewana3_3606 at 4331.087 kb on + strand, within Shewana3_3606 at 4331.092 kb on - strand, within Shewana3_3606 at 4331.129 kb on - strand, within Shewana3_3606 at 4331.129 kb on - strand, within Shewana3_3606 at 4331.129 kb on - strand, within Shewana3_3606 at 4331.164 kb on - strand, within Shewana3_3606 at 4331.165 kb on - strand, within Shewana3_3606 at 4331.165 kb on - strand, within Shewana3_3606 at 4331.211 kb on + strand, within Shewana3_3606 at 4331.219 kb on - strand, within Shewana3_3606 at 4331.338 kb on + strand, within Shewana3_3606 at 4331.346 kb on - strand, within Shewana3_3606 at 4331.492 kb on - strand at 4331.689 kb on - strand, within Shewana3_3607 at 4331.818 kb on - strand, within Shewana3_3607 at 4331.828 kb on - strand, within Shewana3_3607 at 4331.907 kb on + strand, within Shewana3_3607 at 4332.035 kb on + strand, within Shewana3_3607 at 4332.164 kb on + strand at 4332.164 kb on + strand at 4332.172 kb on - strand at 4332.172 kb on - strand at 4332.291 kb on - strand at 4332.381 kb on - strand at 4332.455 kb on + strand at 4332.599 kb on + strand, within Shewana3_3608 at 4332.604 kb on + strand, within Shewana3_3608 at 4332.632 kb on + strand, within Shewana3_3608 at 4332.651 kb on + strand, within Shewana3_3608 at 4332.691 kb on - strand, within Shewana3_3608 at 4332.696 kb on - strand, within Shewana3_3608 at 4332.798 kb on + strand, within Shewana3_3608 at 4332.801 kb on - strand, within Shewana3_3608
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,330,606 - +0.4 4,330,657 - Shewana3_3606 0.12 +0.3 4,330,657 - Shewana3_3606 0.12 +0.1 4,330,733 - Shewana3_3606 0.19 +0.3 4,330,783 - Shewana3_3606 0.24 +0.2 4,330,786 + Shewana3_3606 0.24 +0.7 4,330,803 + Shewana3_3606 0.26 -0.8 4,330,811 - Shewana3_3606 0.26 -0.3 4,330,812 - Shewana3_3606 0.27 +0.8 4,330,861 + Shewana3_3606 0.31 -0.3 4,330,861 + Shewana3_3606 0.31 -0.3 4,330,869 - Shewana3_3606 0.32 +0.7 4,330,894 - Shewana3_3606 0.34 +0.7 4,330,903 + Shewana3_3606 0.35 +0.4 4,330,918 - Shewana3_3606 0.37 +0.2 4,330,997 - Shewana3_3606 0.44 +1.4 4,331,011 - Shewana3_3606 0.45 -0.2 4,331,056 - Shewana3_3606 0.50 +0.2 4,331,087 + Shewana3_3606 0.53 -1.4 4,331,092 - Shewana3_3606 0.53 -0.4 4,331,129 - Shewana3_3606 0.56 -0.1 4,331,129 - Shewana3_3606 0.56 +0.4 4,331,129 - Shewana3_3606 0.56 +0.4 4,331,164 - Shewana3_3606 0.60 +0.4 4,331,165 - Shewana3_3606 0.60 +0.0 4,331,165 - Shewana3_3606 0.60 -0.1 4,331,211 + Shewana3_3606 0.64 -1.4 4,331,219 - Shewana3_3606 0.65 -0.2 4,331,338 + Shewana3_3606 0.76 -0.4 4,331,346 - Shewana3_3606 0.77 +0.1 4,331,492 - -1.4 4,331,689 - Shewana3_3607 0.14 -1.1 4,331,818 - Shewana3_3607 0.35 -0.6 4,331,828 - Shewana3_3607 0.36 +0.5 4,331,907 + Shewana3_3607 0.49 -1.1 4,332,035 + Shewana3_3607 0.69 -0.7 4,332,164 + -1.7 4,332,164 + -0.5 4,332,172 - +1.1 4,332,172 - -1.3 4,332,291 - -0.2 4,332,381 - -0.7 4,332,455 + +0.1 4,332,599 + Shewana3_3608 0.18 -0.9 4,332,604 + Shewana3_3608 0.18 -2.8 4,332,632 + Shewana3_3608 0.21 +1.9 4,332,651 + Shewana3_3608 0.23 -0.5 4,332,691 - Shewana3_3608 0.27 +0.3 4,332,696 - Shewana3_3608 0.27 +0.2 4,332,798 + Shewana3_3608 0.37 -0.2 4,332,801 - Shewana3_3608 0.37 +0.8
Or see this region's nucleotide sequence