Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3602 and Shewana3_3603 are separated by 158 nucleotides Shewana3_3603 and Shewana3_3604 are separated by 24 nucleotides
Shewana3_3602: Shewana3_3602 - hydratase/decarboxylase family protein (RefSeq), at 4,325,639 to 4,326,454
_3602
Shewana3_3603: Shewana3_3603 - TonB family protein (RefSeq), at 4,326,613 to 4,327,728
_3603
Shewana3_3604: Shewana3_3604 - hypothetical protein (RefSeq), at 4,327,753 to 4,328,112
_3604
Position (kb)
4326
4327
4328 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4325.940 kb on + strand, within Shewana3_3602 at 4326.168 kb on - strand, within Shewana3_3602 at 4326.168 kb on - strand, within Shewana3_3602 at 4326.371 kb on + strand, within Shewana3_3602 at 4326.404 kb on + strand at 4326.412 kb on - strand at 4326.460 kb on + strand at 4326.497 kb on - strand at 4326.708 kb on + strand at 4327.141 kb on - strand, within Shewana3_3603 at 4327.150 kb on + strand, within Shewana3_3603 at 4327.164 kb on - strand, within Shewana3_3603 at 4327.213 kb on + strand, within Shewana3_3603 at 4327.218 kb on + strand, within Shewana3_3603 at 4327.221 kb on - strand, within Shewana3_3603 at 4327.223 kb on + strand, within Shewana3_3603 at 4327.494 kb on + strand, within Shewana3_3603 at 4327.500 kb on + strand, within Shewana3_3603 at 4327.508 kb on - strand, within Shewana3_3603 at 4327.508 kb on - strand, within Shewana3_3603 at 4327.676 kb on - strand at 4327.824 kb on - strand, within Shewana3_3604 at 4327.874 kb on + strand, within Shewana3_3604 at 4328.112 kb on + strand at 4328.127 kb on - strand at 4328.193 kb on + strand at 4328.200 kb on - strand at 4328.208 kb on - strand at 4328.265 kb on - strand at 4328.319 kb on + strand at 4328.410 kb on - strand at 4328.567 kb on + strand at 4328.581 kb on + strand at 4328.588 kb on + strand at 4328.635 kb on - strand at 4328.640 kb on - strand at 4328.652 kb on + strand at 4328.652 kb on + strand at 4328.724 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,325,940 + Shewana3_3602 0.37 -0.1 4,326,168 - Shewana3_3602 0.65 +0.0 4,326,168 - Shewana3_3602 0.65 +0.0 4,326,371 + Shewana3_3602 0.90 +0.1 4,326,404 + -0.5 4,326,412 - +0.7 4,326,460 + +0.3 4,326,497 - -0.2 4,326,708 + -0.4 4,327,141 - Shewana3_3603 0.47 -2.8 4,327,150 + Shewana3_3603 0.48 -0.7 4,327,164 - Shewana3_3603 0.49 -1.5 4,327,213 + Shewana3_3603 0.54 -1.3 4,327,218 + Shewana3_3603 0.54 -0.5 4,327,221 - Shewana3_3603 0.54 -0.9 4,327,223 + Shewana3_3603 0.55 -0.6 4,327,494 + Shewana3_3603 0.79 -0.4 4,327,500 + Shewana3_3603 0.79 +1.4 4,327,508 - Shewana3_3603 0.80 +0.2 4,327,508 - Shewana3_3603 0.80 -0.5 4,327,676 - -1.1 4,327,824 - Shewana3_3604 0.20 -0.2 4,327,874 + Shewana3_3604 0.34 -0.7 4,328,112 + -0.5 4,328,127 - -0.3 4,328,193 + -1.4 4,328,200 - +1.0 4,328,208 - -1.5 4,328,265 - -0.6 4,328,319 + -0.5 4,328,410 - -0.3 4,328,567 + +1.9 4,328,581 + -1.5 4,328,588 + -0.7 4,328,635 - +0.1 4,328,640 - -0.7 4,328,652 + -0.9 4,328,652 + -0.8 4,328,724 + -1.4
Or see this region's nucleotide sequence