Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3509 and Shewana3_3510 are separated by 290 nucleotides Shewana3_3510 and Shewana3_3511 are separated by 223 nucleotides Shewana3_3511 and Shewana3_3512 are separated by 103 nucleotides
Shewana3_3509: Shewana3_3509 - malate dehydrogenase (RefSeq), at 4,209,397 to 4,210,332
_3509
Shewana3_3510: Shewana3_3510 - arginine repressor (RefSeq), at 4,210,623 to 4,211,093
_3510
Shewana3_3511: Shewana3_3511 - NAD-dependent epimerase/dehydratase (RefSeq), at 4,211,317 to 4,211,949
_3511
Shewana3_3512: Shewana3_3512 - transcriptional regulator (RefSeq), at 4,212,053 to 4,212,955
_3512
Position (kb) 4211
4212 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4210.326 kb on + strand at 4210.452 kb on + strand at 4210.522 kb on - strand at 4210.613 kb on + strand at 4210.621 kb on - strand at 4210.818 kb on + strand, within Shewana3_3510 at 4210.919 kb on + strand, within Shewana3_3510 at 4210.924 kb on + strand, within Shewana3_3510 at 4210.937 kb on + strand, within Shewana3_3510 at 4211.123 kb on + strand at 4211.259 kb on + strand at 4211.386 kb on - strand, within Shewana3_3511 at 4211.563 kb on + strand, within Shewana3_3511 at 4211.625 kb on + strand, within Shewana3_3511 at 4211.805 kb on + strand, within Shewana3_3511 at 4211.805 kb on + strand, within Shewana3_3511 at 4211.871 kb on + strand, within Shewana3_3511 at 4211.930 kb on + strand at 4212.168 kb on + strand, within Shewana3_3512 at 4212.224 kb on - strand, within Shewana3_3512 at 4212.235 kb on + strand, within Shewana3_3512 at 4212.245 kb on + strand, within Shewana3_3512 at 4212.313 kb on + strand, within Shewana3_3512 at 4212.362 kb on - strand, within Shewana3_3512 at 4212.379 kb on - strand, within Shewana3_3512 at 4212.420 kb on - strand, within Shewana3_3512 at 4212.441 kb on + strand, within Shewana3_3512 at 4212.471 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.484 kb on - strand, within Shewana3_3512 at 4212.486 kb on + strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.494 kb on - strand, within Shewana3_3512 at 4212.494 kb on - strand, within Shewana3_3512 at 4212.526 kb on + strand, within Shewana3_3512 at 4212.552 kb on - strand, within Shewana3_3512 at 4212.667 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.684 kb on - strand, within Shewana3_3512 at 4212.747 kb on + strand, within Shewana3_3512 at 4212.841 kb on + strand, within Shewana3_3512 at 4212.849 kb on - strand, within Shewana3_3512
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,210,326 + +0.6 4,210,452 + +0.2 4,210,522 - +0.3 4,210,613 + +0.6 4,210,621 - -0.7 4,210,818 + Shewana3_3510 0.41 -0.5 4,210,919 + Shewana3_3510 0.63 +0.7 4,210,924 + Shewana3_3510 0.64 +0.3 4,210,937 + Shewana3_3510 0.67 +0.8 4,211,123 + +0.5 4,211,259 + -0.3 4,211,386 - Shewana3_3511 0.11 +0.4 4,211,563 + Shewana3_3511 0.39 -1.2 4,211,625 + Shewana3_3511 0.49 -0.3 4,211,805 + Shewana3_3511 0.77 -2.8 4,211,805 + Shewana3_3511 0.77 -1.9 4,211,871 + Shewana3_3511 0.88 -0.6 4,211,930 + -0.2 4,212,168 + Shewana3_3512 0.13 -0.2 4,212,224 - Shewana3_3512 0.19 -0.2 4,212,235 + Shewana3_3512 0.20 -2.2 4,212,245 + Shewana3_3512 0.21 -0.1 4,212,313 + Shewana3_3512 0.29 +0.7 4,212,362 - Shewana3_3512 0.34 -0.9 4,212,379 - Shewana3_3512 0.36 -0.8 4,212,420 - Shewana3_3512 0.41 -0.6 4,212,441 + Shewana3_3512 0.43 -0.4 4,212,471 + Shewana3_3512 0.46 -0.6 4,212,481 + Shewana3_3512 0.47 -0.1 4,212,481 + Shewana3_3512 0.47 -0.3 4,212,481 + Shewana3_3512 0.47 -0.2 4,212,484 - Shewana3_3512 0.48 -0.1 4,212,486 + Shewana3_3512 0.48 +0.3 4,212,489 - Shewana3_3512 0.48 -1.2 4,212,489 - Shewana3_3512 0.48 -0.3 4,212,489 - Shewana3_3512 0.48 -2.2 4,212,494 - Shewana3_3512 0.49 -3.0 4,212,494 - Shewana3_3512 0.49 -1.0 4,212,526 + Shewana3_3512 0.52 +0.2 4,212,552 - Shewana3_3512 0.55 -1.4 4,212,667 + Shewana3_3512 0.68 +0.6 4,212,676 + Shewana3_3512 0.69 -0.5 4,212,676 + Shewana3_3512 0.69 -0.1 4,212,676 + Shewana3_3512 0.69 -0.3 4,212,684 - Shewana3_3512 0.70 -0.5 4,212,747 + Shewana3_3512 0.77 +1.2 4,212,841 + Shewana3_3512 0.87 +1.0 4,212,849 - Shewana3_3512 0.88 -0.7
Or see this region's nucleotide sequence