Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3480 and Shewana3_3481 are separated by 84 nucleotides Shewana3_3481 and Shewana3_3482 are separated by 333 nucleotides Shewana3_3482 and Shewana3_3483 are separated by 261 nucleotides Shewana3_3483 and Shewana3_3484 are separated by 83 nucleotides
Shewana3_3480: Shewana3_3480 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 4,173,500 to 4,174,765
_3480
Shewana3_3481: Shewana3_3481 - hypoxanthine-guanine phosphoribosyltransferase (RefSeq), at 4,174,850 to 4,175,416
_3481
Shewana3_3482: Shewana3_3482 - alkaline phosphatase (RefSeq), at 4,175,750 to 4,177,516
_3482
Shewana3_3483: Shewana3_3483 - CBS domain-containing protein (RefSeq), at 4,177,778 to 4,178,203
_3483
Shewana3_3484: Shewana3_3484 - hypothetical protein (RefSeq), at 4,178,287 to 4,178,892
_3484
Position (kb)
4175
4176
4177
4178 Strain fitness (log2 ratio)
-2
-1
0
1 at 4174.757 kb on + strand at 4174.955 kb on + strand, within Shewana3_3481 at 4174.963 kb on - strand, within Shewana3_3481 at 4174.968 kb on - strand, within Shewana3_3481 at 4175.162 kb on - strand, within Shewana3_3481 at 4175.350 kb on - strand, within Shewana3_3481 at 4175.427 kb on - strand at 4175.536 kb on + strand at 4175.632 kb on - strand at 4175.775 kb on + strand at 4176.109 kb on + strand, within Shewana3_3482 at 4176.117 kb on - strand, within Shewana3_3482 at 4176.242 kb on + strand, within Shewana3_3482 at 4176.545 kb on + strand, within Shewana3_3482 at 4176.699 kb on + strand, within Shewana3_3482 at 4176.707 kb on - strand, within Shewana3_3482 at 4176.712 kb on - strand, within Shewana3_3482 at 4176.866 kb on - strand, within Shewana3_3482 at 4177.081 kb on - strand, within Shewana3_3482 at 4177.183 kb on - strand, within Shewana3_3482 at 4177.254 kb on - strand, within Shewana3_3482 at 4177.317 kb on - strand, within Shewana3_3482 at 4177.370 kb on - strand at 4177.440 kb on - strand at 4177.461 kb on - strand at 4177.565 kb on - strand at 4177.565 kb on - strand at 4177.565 kb on - strand at 4177.685 kb on - strand at 4177.692 kb on + strand at 4177.692 kb on + strand at 4177.707 kb on - strand at 4177.738 kb on - strand at 4177.800 kb on + strand at 4178.035 kb on - strand, within Shewana3_3483 at 4178.067 kb on - strand, within Shewana3_3483 at 4178.175 kb on + strand at 4178.213 kb on + strand at 4178.247 kb on - strand at 4178.254 kb on - strand at 4178.407 kb on + strand, within Shewana3_3484 at 4178.415 kb on - strand, within Shewana3_3484
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,174,757 + +0.5 4,174,955 + Shewana3_3481 0.19 -1.6 4,174,963 - Shewana3_3481 0.20 +0.8 4,174,968 - Shewana3_3481 0.21 +0.4 4,175,162 - Shewana3_3481 0.55 +0.7 4,175,350 - Shewana3_3481 0.88 +0.6 4,175,427 - -0.1 4,175,536 + -0.1 4,175,632 - -0.1 4,175,775 + -0.0 4,176,109 + Shewana3_3482 0.20 -0.1 4,176,117 - Shewana3_3482 0.21 +0.6 4,176,242 + Shewana3_3482 0.28 -0.8 4,176,545 + Shewana3_3482 0.45 -1.4 4,176,699 + Shewana3_3482 0.54 -0.3 4,176,707 - Shewana3_3482 0.54 +0.1 4,176,712 - Shewana3_3482 0.54 +0.2 4,176,866 - Shewana3_3482 0.63 -0.5 4,177,081 - Shewana3_3482 0.75 +1.0 4,177,183 - Shewana3_3482 0.81 -0.8 4,177,254 - Shewana3_3482 0.85 +0.8 4,177,317 - Shewana3_3482 0.89 -0.2 4,177,370 - +0.7 4,177,440 - +1.0 4,177,461 - +0.0 4,177,565 - +1.1 4,177,565 - +0.4 4,177,565 - +0.5 4,177,685 - -1.8 4,177,692 + -0.6 4,177,692 + +0.1 4,177,707 - +0.0 4,177,738 - +0.3 4,177,800 + +0.1 4,178,035 - Shewana3_3483 0.60 -2.6 4,178,067 - Shewana3_3483 0.68 +0.6 4,178,175 + +1.6 4,178,213 + +0.2 4,178,247 - -1.1 4,178,254 - -0.4 4,178,407 + Shewana3_3484 0.20 -0.9 4,178,415 - Shewana3_3484 0.21 +0.2
Or see this region's nucleotide sequence