Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3480 and Shewana3_3481 are separated by 84 nucleotides Shewana3_3481 and Shewana3_3482 are separated by 333 nucleotides
Shewana3_3480: Shewana3_3480 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 4,173,500 to 4,174,765
_3480
Shewana3_3481: Shewana3_3481 - hypoxanthine-guanine phosphoribosyltransferase (RefSeq), at 4,174,850 to 4,175,416
_3481
Shewana3_3482: Shewana3_3482 - alkaline phosphatase (RefSeq), at 4,175,750 to 4,177,516
_3482
Position (kb)
4174
4175
4176 Strain fitness (log2 ratio)
-2
-1
0
1 at 4173.850 kb on - strand, within Shewana3_3480 at 4173.908 kb on - strand, within Shewana3_3480 at 4174.021 kb on + strand, within Shewana3_3480 at 4174.082 kb on + strand, within Shewana3_3480 at 4174.140 kb on + strand, within Shewana3_3480 at 4174.210 kb on - strand, within Shewana3_3480 at 4174.210 kb on - strand, within Shewana3_3480 at 4174.405 kb on - strand, within Shewana3_3480 at 4174.419 kb on - strand, within Shewana3_3480 at 4174.424 kb on - strand, within Shewana3_3480 at 4174.451 kb on + strand, within Shewana3_3480 at 4174.475 kb on + strand, within Shewana3_3480 at 4174.529 kb on + strand, within Shewana3_3480 at 4174.712 kb on + strand at 4174.757 kb on + strand at 4174.955 kb on + strand, within Shewana3_3481 at 4174.963 kb on - strand, within Shewana3_3481 at 4174.968 kb on - strand, within Shewana3_3481 at 4175.162 kb on - strand, within Shewana3_3481 at 4175.350 kb on - strand, within Shewana3_3481 at 4175.427 kb on - strand at 4175.536 kb on + strand at 4175.632 kb on - strand at 4175.775 kb on + strand at 4176.109 kb on + strand, within Shewana3_3482 at 4176.117 kb on - strand, within Shewana3_3482 at 4176.242 kb on + strand, within Shewana3_3482
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,173,850 - Shewana3_3480 0.28 -0.1 4,173,908 - Shewana3_3480 0.32 +0.2 4,174,021 + Shewana3_3480 0.41 -1.9 4,174,082 + Shewana3_3480 0.46 -0.3 4,174,140 + Shewana3_3480 0.51 -0.2 4,174,210 - Shewana3_3480 0.56 +0.7 4,174,210 - Shewana3_3480 0.56 -0.7 4,174,405 - Shewana3_3480 0.71 +0.6 4,174,419 - Shewana3_3480 0.73 +0.4 4,174,424 - Shewana3_3480 0.73 -0.6 4,174,451 + Shewana3_3480 0.75 +0.1 4,174,475 + Shewana3_3480 0.77 -0.2 4,174,529 + Shewana3_3480 0.81 +0.3 4,174,712 + +1.7 4,174,757 + +0.5 4,174,955 + Shewana3_3481 0.19 -1.6 4,174,963 - Shewana3_3481 0.20 +0.8 4,174,968 - Shewana3_3481 0.21 +0.4 4,175,162 - Shewana3_3481 0.55 +0.7 4,175,350 - Shewana3_3481 0.88 +0.6 4,175,427 - -0.1 4,175,536 + -0.1 4,175,632 - -0.1 4,175,775 + -0.0 4,176,109 + Shewana3_3482 0.20 -0.1 4,176,117 - Shewana3_3482 0.21 +0.6 4,176,242 + Shewana3_3482 0.28 -0.8
Or see this region's nucleotide sequence