Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3459

Experiment: Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0001 mg/ml
4,145,357	+		Shewana3_3458	0.68	+0.6
4,145,364	+		Shewana3_3458	0.68	-1.1
4,145,365	-		Shewana3_3458	0.68	-0.1
4,145,365	-		Shewana3_3458	0.68	-0.3
4,145,499	+		Shewana3_3458	0.74	-0.1
4,145,595	+		Shewana3_3458	0.78	-0.4
4,145,603	-		Shewana3_3458	0.78	-0.1
4,145,623	-		Shewana3_3458	0.79	-1.8
4,145,640	-		Shewana3_3458	0.80	-0.9
4,145,776	+		Shewana3_3458	0.86	-0.8
4,145,872	-				-0.6
4,145,882	-				-0.8
4,145,884	+				-0.4
4,145,923	+				-0.7
4,145,923	+				-0.5
4,145,976	-				-0.4
4,145,984	+				-0.9
4,145,984	+				-0.3
4,145,992	-				-0.4
4,146,060	+				-0.1
4,146,129	+				-0.4
4,146,137	-				-0.1
4,146,188	+				-0.4
4,146,196	-				+1.0
4,146,208	-				+0.0
4,146,220	+				-0.9
4,146,248	+				-0.1
4,146,256	-				-0.2
4,146,275	+				+0.3
4,146,283	-				-1.0
4,146,283	-				-0.8
4,146,284	-				-0.5
4,146,284	-				-0.5
4,146,284	-				-0.1
4,146,290	+				-2.4
4,146,290	+				-1.1
4,146,290	+				+0.2
4,146,298	-		Shewana3_3459	0.11	-0.4
4,146,298	-		Shewana3_3459	0.11	+0.6
4,146,298	-		Shewana3_3459	0.11	+0.2
4,146,298	-		Shewana3_3459	0.11	-0.4
4,146,298	-		Shewana3_3459	0.11	+1.3
4,146,298	-		Shewana3_3459	0.11	-0.1
4,146,298	-		Shewana3_3459	0.11	+0.0
4,146,369	-		Shewana3_3459	0.22	+0.2
4,146,393	+		Shewana3_3459	0.25	-2.0
4,146,401	-		Shewana3_3459	0.26	-0.3
4,146,401	-		Shewana3_3459	0.26	-0.6
4,146,424	-		Shewana3_3459	0.30	+0.3
4,146,425	+		Shewana3_3459	0.30	-0.9
4,146,426	+		Shewana3_3459	0.30	-0.0
4,146,426	+		Shewana3_3459	0.30	-0.7
4,146,426	+		Shewana3_3459	0.30	+0.3
4,146,426	+		Shewana3_3459	0.30	-1.5
4,146,426	+		Shewana3_3459	0.30	-1.9
4,146,426	+		Shewana3_3459	0.30	-1.4
4,146,432	+		Shewana3_3459	0.31	-0.7
4,146,432	+		Shewana3_3459	0.31	-0.7
4,146,432	+		Shewana3_3459	0.31	-0.5
4,146,434	-		Shewana3_3459	0.31	-0.7
4,146,434	-		Shewana3_3459	0.31	-0.7
4,146,434	-		Shewana3_3459	0.31	-2.2
4,146,434	-		Shewana3_3459	0.31	-1.6
4,146,434	-		Shewana3_3459	0.31	-0.5
4,146,434	-		Shewana3_3459	0.31	-0.1
4,146,434	-		Shewana3_3459	0.31	-0.9
4,146,434	-		Shewana3_3459	0.31	-1.4
4,146,434	-		Shewana3_3459	0.31	-0.0
4,146,440	-		Shewana3_3459	0.32	+0.3
4,146,440	-		Shewana3_3459	0.32	-0.1
4,146,440	-		Shewana3_3459	0.32	-0.1
4,146,474	-		Shewana3_3459	0.37	+0.9
4,146,490	+		Shewana3_3459	0.40	-0.4
4,146,495	+		Shewana3_3459	0.40	-0.3
4,146,694	+		Shewana3_3459	0.70	-0.1
4,146,699	+		Shewana3_3459	0.71	-0.5
4,146,702	-		Shewana3_3459	0.71	-0.2
4,146,702	-		Shewana3_3459	0.71	-1.0
4,146,702	-		Shewana3_3459	0.71	-0.2
4,146,702	-		Shewana3_3459	0.71	-0.3
4,146,844	-				-0.3
4,146,986	+				-0.4
4,146,989	-				+0.2
4,147,055	+				-0.5
4,147,065	+				+0.0
4,147,072	+				+0.6
4,147,073	-				+0.2
4,147,140	-				-0.1
4,147,170	-				-2.0
4,147,270	-				-1.1
4,147,334	-				-0.3
4,147,427	+		Shewana3_3460	0.12	+1.2
4,147,435	-		Shewana3_3460	0.12	-0.1
4,147,437	+		Shewana3_3460	0.12	-0.2
4,147,475	+		Shewana3_3460	0.14	+0.2
4,147,485	+		Shewana3_3460	0.14	-2.6
4,147,492	-		Shewana3_3460	0.14	+0.3
4,147,493	-		Shewana3_3460	0.14	-0.3
4,147,729	-		Shewana3_3460	0.21	+0.5