Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3441 and Shewana3_3442 are separated by 180 nucleotides Shewana3_3442 and Shewana3_3443 are separated by 129 nucleotides Shewana3_3443 and Shewana3_3444 are separated by 8 nucleotides
Shewana3_3441: Shewana3_3441 - hypothetical protein (RefSeq), at 4,123,590 to 4,124,747
_3441
Shewana3_3442: Shewana3_3442 - hypothetical protein (RefSeq), at 4,124,928 to 4,125,533
_3442
Shewana3_3443: Shewana3_3443 - endonuclease I (RefSeq), at 4,125,663 to 4,126,436
_3443
Shewana3_3444: Shewana3_3444 - 16S ribosomal RNA methyltransferase RsmE (RefSeq), at 4,126,445 to 4,127,176
_3444
Position (kb) 4124
4125
4126 Strain fitness (log2 ratio) -1
0
1 at 4123.961 kb on - strand, within Shewana3_3441 at 4124.091 kb on + strand, within Shewana3_3441 at 4124.396 kb on - strand, within Shewana3_3441 at 4124.455 kb on - strand, within Shewana3_3441 at 4124.479 kb on + strand, within Shewana3_3441 at 4124.487 kb on - strand, within Shewana3_3441 at 4124.499 kb on - strand, within Shewana3_3441 at 4124.639 kb on + strand at 4124.639 kb on + strand at 4124.656 kb on + strand at 4124.664 kb on - strand at 4124.729 kb on + strand at 4124.834 kb on + strand at 4124.842 kb on - strand at 4124.842 kb on - strand at 4124.872 kb on + strand at 4125.175 kb on + strand, within Shewana3_3442 at 4125.215 kb on - strand, within Shewana3_3442 at 4125.215 kb on - strand, within Shewana3_3442 at 4125.341 kb on + strand, within Shewana3_3442 at 4125.348 kb on - strand, within Shewana3_3442 at 4125.353 kb on + strand, within Shewana3_3442 at 4125.681 kb on + strand at 4125.681 kb on + strand at 4125.689 kb on - strand at 4125.689 kb on - strand at 4125.850 kb on - strand, within Shewana3_3443 at 4125.907 kb on - strand, within Shewana3_3443 at 4126.008 kb on - strand, within Shewana3_3443 at 4126.026 kb on + strand, within Shewana3_3443 at 4126.070 kb on - strand, within Shewana3_3443 at 4126.070 kb on - strand, within Shewana3_3443 at 4126.320 kb on + strand, within Shewana3_3443 at 4126.351 kb on - strand, within Shewana3_3443 at 4126.510 kb on + strand at 4126.513 kb on - strand at 4126.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,123,961 - Shewana3_3441 0.32 +0.2 4,124,091 + Shewana3_3441 0.43 -0.1 4,124,396 - Shewana3_3441 0.70 +0.0 4,124,455 - Shewana3_3441 0.75 -0.0 4,124,479 + Shewana3_3441 0.77 +0.2 4,124,487 - Shewana3_3441 0.77 +0.1 4,124,499 - Shewana3_3441 0.78 -0.3 4,124,639 + +0.3 4,124,639 + +0.6 4,124,656 + +0.2 4,124,664 - -0.2 4,124,729 + +0.1 4,124,834 + -0.4 4,124,842 - -1.4 4,124,842 - +0.3 4,124,872 + -0.2 4,125,175 + Shewana3_3442 0.41 +0.2 4,125,215 - Shewana3_3442 0.47 +0.4 4,125,215 - Shewana3_3442 0.47 -0.4 4,125,341 + Shewana3_3442 0.68 -0.9 4,125,348 - Shewana3_3442 0.69 +1.3 4,125,353 + Shewana3_3442 0.70 +1.0 4,125,681 + -1.4 4,125,681 + -1.0 4,125,689 - +0.3 4,125,689 - +0.1 4,125,850 - Shewana3_3443 0.24 +0.1 4,125,907 - Shewana3_3443 0.32 -0.3 4,126,008 - Shewana3_3443 0.45 +0.4 4,126,026 + Shewana3_3443 0.47 -0.9 4,126,070 - Shewana3_3443 0.53 -0.4 4,126,070 - Shewana3_3443 0.53 -0.7 4,126,320 + Shewana3_3443 0.85 +1.5 4,126,351 - Shewana3_3443 0.89 -0.6 4,126,510 + +0.3 4,126,513 - +0.2 4,126,518 - -0.2
Or see this region's nucleotide sequence