Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3436 and Shewana3_3437 are separated by 490 nucleotides Shewana3_3437 and Shewana3_3438 are separated by 459 nucleotides
Shewana3_3436: Shewana3_3436 - elongation factor G (RefSeq), at 4,112,060 to 4,114,153
_3436
Shewana3_3437: Shewana3_3437 - diguanylate cyclase (RefSeq), at 4,114,644 to 4,116,095
_3437
Shewana3_3438: Shewana3_3438 - carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq), at 4,116,555 to 4,121,108
_3438
Position (kb)
4114
4115
4116
4117 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4114.484 kb on + strand at 4114.492 kb on - strand at 4114.499 kb on + strand at 4114.627 kb on - strand at 4114.787 kb on - strand at 4114.884 kb on + strand, within Shewana3_3437 at 4114.899 kb on + strand, within Shewana3_3437 at 4114.907 kb on - strand, within Shewana3_3437 at 4114.937 kb on - strand, within Shewana3_3437 at 4114.987 kb on - strand, within Shewana3_3437 at 4115.131 kb on + strand, within Shewana3_3437 at 4115.228 kb on + strand, within Shewana3_3437 at 4115.228 kb on + strand, within Shewana3_3437 at 4115.267 kb on - strand, within Shewana3_3437 at 4115.362 kb on - strand, within Shewana3_3437 at 4115.406 kb on + strand, within Shewana3_3437 at 4115.417 kb on + strand, within Shewana3_3437 at 4115.449 kb on - strand, within Shewana3_3437 at 4115.464 kb on + strand, within Shewana3_3437 at 4115.554 kb on + strand, within Shewana3_3437 at 4115.554 kb on + strand, within Shewana3_3437 at 4115.656 kb on - strand, within Shewana3_3437 at 4115.656 kb on - strand, within Shewana3_3437 at 4115.699 kb on - strand, within Shewana3_3437 at 4115.792 kb on - strand, within Shewana3_3437 at 4116.204 kb on + strand at 4116.206 kb on + strand at 4116.214 kb on - strand at 4116.411 kb on + strand at 4116.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,114,484 + -0.1 4,114,492 - +0.2 4,114,499 + -0.2 4,114,627 - -0.1 4,114,787 - +0.1 4,114,884 + Shewana3_3437 0.17 -1.3 4,114,899 + Shewana3_3437 0.18 -1.4 4,114,907 - Shewana3_3437 0.18 +0.4 4,114,937 - Shewana3_3437 0.20 -0.9 4,114,987 - Shewana3_3437 0.24 -0.2 4,115,131 + Shewana3_3437 0.34 -2.9 4,115,228 + Shewana3_3437 0.40 -0.6 4,115,228 + Shewana3_3437 0.40 -0.9 4,115,267 - Shewana3_3437 0.43 -0.5 4,115,362 - Shewana3_3437 0.49 -0.6 4,115,406 + Shewana3_3437 0.52 -0.4 4,115,417 + Shewana3_3437 0.53 -0.3 4,115,449 - Shewana3_3437 0.55 -0.6 4,115,464 + Shewana3_3437 0.56 -2.9 4,115,554 + Shewana3_3437 0.63 +0.0 4,115,554 + Shewana3_3437 0.63 +0.6 4,115,656 - Shewana3_3437 0.70 +0.4 4,115,656 - Shewana3_3437 0.70 +0.4 4,115,699 - Shewana3_3437 0.73 +1.0 4,115,792 - Shewana3_3437 0.79 -0.1 4,116,204 + +0.9 4,116,206 + +1.7 4,116,214 - -1.1 4,116,411 + -0.0 4,116,455 + -0.0
Or see this region's nucleotide sequence