Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3435 and Shewana3_3436 are separated by 161 nucleotides Shewana3_3436 and Shewana3_3437 are separated by 490 nucleotides
Shewana3_3435: Shewana3_3435 - LysR family transcriptional regulator (RefSeq), at 4,111,011 to 4,111,898
_3435
Shewana3_3436: Shewana3_3436 - elongation factor G (RefSeq), at 4,112,060 to 4,114,153
_3436
Shewana3_3437: Shewana3_3437 - diguanylate cyclase (RefSeq), at 4,114,644 to 4,116,095
_3437
Position (kb)
4112
4113
4114
4115 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4111.149 kb on - strand, within Shewana3_3435 at 4111.187 kb on + strand, within Shewana3_3435 at 4111.187 kb on + strand, within Shewana3_3435 at 4111.440 kb on - strand, within Shewana3_3435 at 4111.481 kb on + strand, within Shewana3_3435 at 4111.578 kb on + strand, within Shewana3_3435 at 4111.930 kb on + strand at 4111.930 kb on + strand at 4111.930 kb on + strand at 4111.930 kb on + strand at 4111.938 kb on - strand at 4111.938 kb on - strand at 4111.953 kb on + strand at 4111.953 kb on + strand at 4111.953 kb on + strand at 4111.961 kb on - strand at 4114.484 kb on + strand at 4114.492 kb on - strand at 4114.499 kb on + strand at 4114.627 kb on - strand at 4114.787 kb on - strand at 4114.884 kb on + strand, within Shewana3_3437 at 4114.899 kb on + strand, within Shewana3_3437 at 4114.907 kb on - strand, within Shewana3_3437 at 4114.937 kb on - strand, within Shewana3_3437 at 4114.987 kb on - strand, within Shewana3_3437 at 4115.131 kb on + strand, within Shewana3_3437
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,111,149 - Shewana3_3435 0.16 -0.0 4,111,187 + Shewana3_3435 0.20 -0.8 4,111,187 + Shewana3_3435 0.20 -1.8 4,111,440 - Shewana3_3435 0.48 -0.4 4,111,481 + Shewana3_3435 0.53 -0.3 4,111,578 + Shewana3_3435 0.64 -1.3 4,111,930 + -0.8 4,111,930 + -2.0 4,111,930 + -0.3 4,111,930 + -0.3 4,111,938 - -1.7 4,111,938 - -1.0 4,111,953 + -1.6 4,111,953 + -0.9 4,111,953 + -0.9 4,111,961 - -0.1 4,114,484 + -0.1 4,114,492 - +0.2 4,114,499 + -0.2 4,114,627 - -0.1 4,114,787 - +0.1 4,114,884 + Shewana3_3437 0.17 -1.3 4,114,899 + Shewana3_3437 0.18 -1.4 4,114,907 - Shewana3_3437 0.18 +0.4 4,114,937 - Shewana3_3437 0.20 -0.9 4,114,987 - Shewana3_3437 0.24 -0.2 4,115,131 + Shewana3_3437 0.34 -2.9
Or see this region's nucleotide sequence