Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3428 and Shewana3_3429 are separated by 241 nucleotides Shewana3_3429 and Shewana3_3430 overlap by 4 nucleotides Shewana3_3430 and napG are separated by 51 nucleotides napG and napH overlap by 4 nucleotides
Shewana3_3428: Shewana3_3428 - hypothetical protein (RefSeq), at 4,103,707 to 4,105,332
_3428
Shewana3_3429: Shewana3_3429 - NapD family protein (RefSeq), at 4,105,574 to 4,105,843
_3429
Shewana3_3430: Shewana3_3430 - nitrate reductase catalytic subunit (RefSeq), at 4,105,840 to 4,108,320
_3430
Shewana3_3431: napG - quinol dehydrogenase periplasmic component (RefSeq), at 4,108,372 to 4,109,106
napG
Shewana3_3432: napH - quinol dehydrogenase membrane component (RefSeq), at 4,109,103 to 4,110,086
napH
Position (kb)
4105
4106
4107
4108
4109 Strain fitness (log2 ratio)
-2
-1
0
1 at 4104.987 kb on + strand, within Shewana3_3428 at 4105.046 kb on - strand, within Shewana3_3428 at 4105.153 kb on + strand, within Shewana3_3428 at 4105.153 kb on + strand, within Shewana3_3428 at 4105.345 kb on + strand at 4105.345 kb on + strand at 4105.490 kb on + strand at 4105.490 kb on + strand at 4105.498 kb on - strand at 4105.636 kb on + strand, within Shewana3_3429 at 4105.746 kb on + strand, within Shewana3_3429 at 4105.805 kb on + strand, within Shewana3_3429 at 4105.957 kb on - strand at 4106.078 kb on + strand at 4106.086 kb on - strand at 4106.243 kb on + strand, within Shewana3_3430 at 4106.250 kb on + strand, within Shewana3_3430 at 4106.422 kb on + strand, within Shewana3_3430 at 4106.634 kb on - strand, within Shewana3_3430 at 4106.760 kb on - strand, within Shewana3_3430 at 4106.796 kb on + strand, within Shewana3_3430 at 4106.915 kb on - strand, within Shewana3_3430 at 4107.067 kb on + strand, within Shewana3_3430 at 4107.075 kb on - strand, within Shewana3_3430 at 4107.085 kb on - strand, within Shewana3_3430 at 4107.111 kb on + strand, within Shewana3_3430 at 4107.111 kb on + strand, within Shewana3_3430 at 4107.196 kb on - strand, within Shewana3_3430 at 4107.366 kb on + strand, within Shewana3_3430 at 4107.369 kb on - strand, within Shewana3_3430 at 4107.394 kb on + strand, within Shewana3_3430 at 4107.449 kb on - strand, within Shewana3_3430 at 4107.539 kb on + strand, within Shewana3_3430 at 4107.938 kb on - strand, within Shewana3_3430 at 4108.015 kb on - strand, within Shewana3_3430 at 4108.039 kb on + strand, within Shewana3_3430 at 4108.039 kb on + strand, within Shewana3_3430 at 4108.042 kb on - strand, within Shewana3_3430 at 4108.097 kb on - strand at 4108.408 kb on + strand at 4108.410 kb on + strand at 4108.724 kb on - strand, within napG at 4108.867 kb on + strand, within napG at 4109.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 4,104,987 + Shewana3_3428 0.79 -1.1 4,105,046 - Shewana3_3428 0.82 -0.5 4,105,153 + Shewana3_3428 0.89 -0.7 4,105,153 + Shewana3_3428 0.89 -1.3 4,105,345 + -0.9 4,105,345 + +1.1 4,105,490 + +1.1 4,105,490 + +1.0 4,105,498 - +0.1 4,105,636 + Shewana3_3429 0.23 +0.4 4,105,746 + Shewana3_3429 0.64 +0.8 4,105,805 + Shewana3_3429 0.86 +0.6 4,105,957 - -0.9 4,106,078 + -0.2 4,106,086 - -0.1 4,106,243 + Shewana3_3430 0.16 -0.8 4,106,250 + Shewana3_3430 0.17 -1.3 4,106,422 + Shewana3_3430 0.23 -1.1 4,106,634 - Shewana3_3430 0.32 -1.4 4,106,760 - Shewana3_3430 0.37 -0.2 4,106,796 + Shewana3_3430 0.39 -0.7 4,106,915 - Shewana3_3430 0.43 +0.5 4,107,067 + Shewana3_3430 0.49 -1.1 4,107,075 - Shewana3_3430 0.50 -1.8 4,107,085 - Shewana3_3430 0.50 -0.3 4,107,111 + Shewana3_3430 0.51 -0.1 4,107,111 + Shewana3_3430 0.51 -0.9 4,107,196 - Shewana3_3430 0.55 +0.2 4,107,366 + Shewana3_3430 0.62 -0.5 4,107,369 - Shewana3_3430 0.62 +0.3 4,107,394 + Shewana3_3430 0.63 +0.0 4,107,449 - Shewana3_3430 0.65 +0.1 4,107,539 + Shewana3_3430 0.68 +0.4 4,107,938 - Shewana3_3430 0.85 +0.2 4,108,015 - Shewana3_3430 0.88 -0.9 4,108,039 + Shewana3_3430 0.89 +0.8 4,108,039 + Shewana3_3430 0.89 +0.6 4,108,042 - Shewana3_3430 0.89 +0.0 4,108,097 - -0.5 4,108,408 + -0.2 4,108,410 + -0.4 4,108,724 - napG Shewana3_3431 0.48 +0.1 4,108,867 + napG Shewana3_3431 0.67 +0.2 4,109,052 + +0.8
Or see this region's nucleotide sequence