Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3273 and Shewana3_3274 are separated by 148 nucleotides Shewana3_3274 and Shewana3_3275 are separated by 28 nucleotides
Shewana3_3273: Shewana3_3273 - hypothetical protein (RefSeq), at 3,912,644 to 3,913,681
_3273
Shewana3_3274: Shewana3_3274 - cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq), at 3,913,830 to 3,914,465
_3274
Shewana3_3275: Shewana3_3275 - cobyric acid synthase (RefSeq), at 3,914,494 to 3,916,119
_3275
Position (kb)
3913
3914
3915 Strain fitness (log2 ratio)
-2
-1
0
1 at 3913.305 kb on - strand, within Shewana3_3273 at 3913.371 kb on - strand, within Shewana3_3273 at 3913.433 kb on + strand, within Shewana3_3273 at 3913.438 kb on + strand, within Shewana3_3273 at 3913.801 kb on + strand at 3913.828 kb on + strand at 3914.076 kb on - strand, within Shewana3_3274 at 3914.153 kb on - strand, within Shewana3_3274 at 3914.206 kb on + strand, within Shewana3_3274 at 3914.426 kb on - strand at 3914.643 kb on + strand at 3914.651 kb on - strand at 3914.651 kb on - strand at 3915.019 kb on - strand, within Shewana3_3275 at 3915.029 kb on - strand, within Shewana3_3275 at 3915.029 kb on - strand, within Shewana3_3275 at 3915.165 kb on - strand, within Shewana3_3275 at 3915.204 kb on + strand, within Shewana3_3275 at 3915.212 kb on - strand, within Shewana3_3275 at 3915.212 kb on - strand, within Shewana3_3275 at 3915.357 kb on - strand, within Shewana3_3275
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,913,305 - Shewana3_3273 0.64 -0.1 3,913,371 - Shewana3_3273 0.70 -1.1 3,913,433 + Shewana3_3273 0.76 -0.3 3,913,438 + Shewana3_3273 0.76 +0.6 3,913,801 + -1.2 3,913,828 + -0.3 3,914,076 - Shewana3_3274 0.39 -0.9 3,914,153 - Shewana3_3274 0.51 +0.2 3,914,206 + Shewana3_3274 0.59 -2.1 3,914,426 - +0.1 3,914,643 + +0.8 3,914,651 - +0.5 3,914,651 - +0.2 3,915,019 - Shewana3_3275 0.32 -0.2 3,915,029 - Shewana3_3275 0.33 +0.1 3,915,029 - Shewana3_3275 0.33 +0.9 3,915,165 - Shewana3_3275 0.41 -0.4 3,915,204 + Shewana3_3275 0.44 -0.8 3,915,212 - Shewana3_3275 0.44 -0.5 3,915,212 - Shewana3_3275 0.44 -0.3 3,915,357 - Shewana3_3275 0.53 +0.3
Or see this region's nucleotide sequence